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Update README.md
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mkayasth authored May 10, 2024
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Expand Up @@ -42,4 +42,6 @@ Alternatively, you can use the command line interface with main.py (app.py calls
```shell
python3 main.py <input_fasta_file> <reference strain>
```
The <input_fasta_file> comprises the complete set of whole genome sequences (WGS) for the strains you intend to analyze. Each strain's FASTA header should be the name of the strain.
The <input_fasta_file> comprises the complete set of whole genome sequences (WGS) for the strains you intend to analyze.

<b>Each strain's FASTA header should be the name of the strain. </b>

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