v0.3.3

API updates for simulator (the pose, structural ensemble, and CTF) and relion datasets. Create cryojax.utils submodule for useful features for working with JAX/Equinox. Fix deprecation of equinox.internal.if_mapped so that cryojax works with newest versions of equinox.

What's Changed

• Add IndependentGaussianPixels distribution by @mjo22 in #289
• Get rid of conformational_space abstract attribute in AbstractStructuralEnsemble by @mjo22 in #293
• update ewald branch by @mjo22 in #300
• Remove extra definition of voltage in the CTF by @mjo22 in #295
• Merge relion refactoring with assembly + offset_z_in_angstroms refactoring by @mjo22 in #301
• Remove offset_z_in_angstroms. Required a refactoring of the AbstractAssembly by @mjo22 in #302
• Refactor RelionDataset into two cases, one for reading metadata and another for images + metadata by @mjo22 in #298
• Ewald sphere initial attempt in cryojax.experimental by @mjo22 in #296
• Refactor transforms interface by @mjo22 in #306
• Change vmap recommendations to remove if_mapped from equinox by @mjo22 in #307
• Lift error if underfocus is passed by @mjo22 in #308
• Document cryojax.coordinates and create API directory for docs by @mjo22 in #309
• Documentation and bugfixes for cryojax.constants by @mjo22 in #312

Full Changelog: v0.3.2...v0.3.3