also set smaps for non 2D case. #357
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| # this file is *not* meant to cover or endorse the use of GitHub Actions, but rather to | |
| # help test this project | |
| name: Test | |
| on: | |
| pull_request: | |
| branches: ["main"] | |
| push: | |
| branches: ["main"] | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| python: ['3.10' , '3.12'] | |
| platform: ["gpu"] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| export CUDA_BIN_PATH=/usr/local/cuda-12.1/ | |
| export PATH=/usr/local/cuda-12.1/bin/:${PATH} | |
| export LD_LIBRARY_PATH=/usr/local/cuda-12.1/lib64/:${LD_LIBRARY_PATH} | |
| python -m pip install --upgrade pip | |
| pip install cufinufft cupy-cuda12x finufft ipywidgets | |
| pip install -e .[test,toolkit] | |
| - name: Test | |
| run: | | |
| pytest tests --cov --cov-branch --cov-report=term | |
| test-examples: | |
| runs-on: "gpu" | |
| strategy: | |
| matrix: | |
| python: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache: 'pip' | |
| - name: Restore cached brainweb-dl directory | |
| uses: actions/cache/restore@v4 | |
| id: cache-restore | |
| with: | |
| path: ~/.cache/brainweb | |
| key: ${{ runner.os }}-Brainweb | |
| - name: Install dependencies | |
| run: | | |
| export CUDA_BIN_PATH=/usr/local/cuda-12.1/ | |
| export PATH=/usr/local/cuda-12.1/bin/:${PATH} | |
| export LD_LIBRARY_PATH=/usr/local/cuda-12.1/lib64/:${LD_LIBRARY_PATH} | |
| python -m pip install --upgrade pip | |
| pip install cufinufft cupy-cuda12x finufft ipywidgets | |
| pip install -e .[test,toolkit] | |
| - name: Test | |
| run: | | |
| pytest examples/anatomical | |
| - name: Cache brainweb-dl directory | |
| uses: actions/cache/save@v4 | |
| if: ${{ steps.cache-restore.outputs.cache-hit != 'true' }} | |
| with: | |
| path: ~/.cache/brainweb | |
| key: ${{ runner.os }}-Brainweb | |
| linters: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[toolkit] | |
| pip install ruff | |
| - name: Linters | |
| run: | | |
| ruff check src | |
| ruff format --check src | |
| - name: Annotate locations with typos | |
| if: always() | |
| uses: codespell-project/codespell-problem-matcher@v1 | |
| - name: Codespell | |
| if: always() | |
| uses: codespell-project/actions-codespell@v2 |