fl2e/fl2-869/Reduce Max within distance of SNP-to-marker associations…

… from 10kb to 2kb
mgijax · May 28, 2024 · 6dc0609 · 6dc0609
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diff --git a/HISTORY b/HISTORY
@@ -1,3 +1,11 @@
+TAG: snpcacheload-6-0-23-?
+DATE: 05/28/2024
+STAFF: lec
+fl2e/fl2-869/Reduce Max "within distance of" SNP-to-marker associations from 10kb to 2kb
+change: MARKER_PAD  from 10000 to 2000, on this line:
+MARKER_PAD      = 2000
+#       modified:   snpmrkwithin.py
+
 TAG: snpcacheload-6-0-22-6
 TAG: snpcacheload-6-0-22-5
 DATE: 11/07/2023

diff --git a/snpmrkwithin.py b/snpmrkwithin.py
@@ -84,7 +84,7 @@
 WITHIN_COORD_TERM = 'within coordinates of'
 WITHIN_KB_TERM = 'within distance of'
 
-MARKER_PAD      = 10000	# max number of BP away a SNP can be FROM a
+MARKER_PAD      = 2000	# max number of BP away a SNP can be FROM a
                         # marker to compute a SNP-marker association
 
 # max number of SNPs in chr region to process at at time