GitHub - mgijax/autolittriage: Using machine learning to automate literature triage tasks

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Using machine learning to automate literature triage tasks

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Name		Name	Last commit message	Last commit date
Latest commit History 226 Commits
Backpopulate		Backpopulate
PlayTrying		PlayTrying
Train		Train
test		test
.gitignore		.gitignore
Configuration		Configuration
Configuration.default		Configuration.default
HISTORY		HISTORY
Install		Install
Notes.txt		Notes.txt
Readme.txt		Readme.txt
addmeta		addmeta
buildSmall.sh		buildSmall.sh
cellLines.all		cellLines.all
cellLines.nopre		cellLines.nopre
cellLines.pre		cellLines.pre
featureTransform.py		featureTransform.py
figureText.py		figureText.py
journalDist.py		journalDist.py
journalsGetAll.sql		journalsGetAll.sql
journalsMonitored.txt		journalsMonitored.txt
newpdftotext		newpdftotext
rcd2line		rcd2line
relevanceClassifier.py		relevanceClassifier.py
retrainlite.sh		retrainlite.sh
sampleDataLib.py		sampleDataLib.py
sdBuild1Get.sh		sdBuild1Get.sh
sdBuild2Fig.sh		sdBuild2Fig.sh
sdBuild3Pre.sh		sdBuild3Pre.sh
sdBuild4Split.sh		sdBuild4Split.sh
sdGetBackPopulated.py		sdGetBackPopulated.py
sdGetRawCurGroups.py		sdGetRawCurGroups.py
sdGetRawPrimTriage.py		sdGetRawPrimTriage.py
sdSplitSamples.py		sdSplitSamples.py
subsetPandR.py		subsetPandR.py
text2FigureText.py		text2FigureText.py
textpresso.txt		textpresso.txt
triageIdeas.txt		triageIdeas.txt

Repository files navigation

Using Machine Learning/Sklearn to automate MGI literature triage steps.

Training/primTriage 	- models for primary triage
Training/*		- attempted models for other secondary triage steps
Training/smallTest	- tiny dataset for testing library/utility mods