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Release 2.8.1#24

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Commits

Commits on May 27, 2024

• replaced singularity with container

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• fixed indentations

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• fixed singularity_args attribute error

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• fixed attribute error

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• fixed tabs

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• fixed tabs

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• removed commented rule

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• replaced dynamic with checkpoint

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Commits on May 28, 2024

• renamed singularity to containers

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• renamed singularity_envs to containers

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• added triple quote shells

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• fixed awk brackets

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• fixed centrifuge conda env

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• added bakta_db config

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• improved formatting, set max_colwidth to 1

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• improved formatting, replaced GC with gc_fraction

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• added .gitignore

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• updated checkm container

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• improved formatting, set max_colwidth to 1

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• moved imports, updated GC to gc_fraction

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• removed commented bash line

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• improved formatting

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• fixed container in report_resistance

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• Changed max_colwidth to 1

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• removed unused imports

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• updated python-r docker

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Commits on May 29, 2024

• updated rgi and python-r dockers

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• remove commented rule

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