Increase timeouts

logs/MVTopicModelling.log

@@ -51348,3 +51348,12 @@
 
 2017-10-06 12:51:19 DBpediaAnnotator [INFO] [2]: Extraction time for 253 pub: Total:325 ms AvgPerRequest:14.772727272727273 ms 
 
+2017-10-06 15:10:51 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:11:47 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:18:37 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:37:56 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:50:36 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:50:51 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:53:44 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:54:06 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 16:21:32 PTMFlow [INFO]  TopicModelling has started

nbactions.xml

@@ -10,7 +10,7 @@
                 <goal>org.codehaus.mojo:exec-maven-plugin:1.2.1:exec</goal>
             </goals>
             <properties>
-                <exec.args>-Xms2G -Xmx28G -classpath %classpath org.madgik.dbpediaspotlightclient.DBpediaAnnotator</exec.args>
+                <exec.args>-Xms2G -Xmx28G -classpath %classpath org.madgik.MVTopicModel.PTMFlow</exec.args>
                 <exec.executable>java</exec.executable>
             </properties>
         </action>
@@ -24,7 +24,7 @@
                 <goal>org.codehaus.mojo:exec-maven-plugin:1.2.1:exec</goal>
             </goals>
             <properties>
-                <exec.args>-Xdebug -Xrunjdwp:transport=dt_socket,server=n,address=${jpda.address} -Xms2G -Xmx28G -classpath %classpath org.madgik.dbpediaspotlightclient.DBpediaAnnotator</exec.args>
+                <exec.args>-Xdebug -Xrunjdwp:transport=dt_socket,server=n,address=${jpda.address} -Xms2G -Xmx28G -classpath %classpath org.madgik.MVTopicModel.PTMFlow</exec.args>
                 <exec.executable>java</exec.executable>
                 <jpda.listen>true</jpda.listen>
             </properties>
@@ -39,7 +39,7 @@
                 <goal>org.codehaus.mojo:exec-maven-plugin:1.2.1:exec</goal>
             </goals>
             <properties>
-                <exec.args>-Xms2G -Xmx28G -classpath %classpath org.madgik.dbpediaspotlightclient.DBpediaAnnotator</exec.args>
+                <exec.args>-Xms2G -Xmx28G -classpath %classpath org.madgik.MVTopicModel.PTMFlow</exec.args>
                 <exec.executable>java</exec.executable>
             </properties>
         </action>

output/logs/MVTopicModelling.log

@@ -0,0 +1,12 @@
+2017-10-06 15:08:49 DBpediaAnnotator [INFO] DBPedia annotation started
+2017-10-06 15:08:49 DBpediaAnnotator [INFO] DBPedia annotation: Annotate new publications
+2017-10-06 15:08:49 DBpediaAnnotator [INFO] Get new publications
+2017-10-06 15:08:55 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 15:42:26 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 16:45:30 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 16:46:37 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 16:51:36 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 16:51:36 PTMFlow [INFO]  Get text from the database
+2017-10-06 16:54:57 PTMFlow [INFO]  Get side info from the database
+2017-10-06 16:57:51 PTMFlow [INFO]  TopicModelling has started
+2017-10-06 16:57:51 PTMFlow [INFO]  Get text from the database

output/stoplists/README

@@ -0,0 +1,3 @@
+English stoplist is the standard Mallet stoplist.
+
+German, French, Finnish are borrowed from http://www.ranks.nl.

output/stoplists/de.txt

@@ -0,0 +1,129 @@
+aber
+als
+am
+an
+auch
+auf
+aus
+bei
+bin
+bis
+bist
+da
+dadurch
+daher
+darum
+das
+daß
+dass
+dein
+deine
+dem
+den
+der
+des
+dessen
+deshalb
+die
+dies
+dieser
+dieses
+doch
+dort
+du
+durch
+ein
+eine
+einem
+einen
+einer
+eines
+er
+es
+euer
+eure
+für
+hatte
+hatten
+hattest
+hattet
+hier
+hinter
+ich
+ihr
+ihre
+im
+in
+ist
+ja
+jede
+jedem
+jeden
+jeder
+jedes
+jener
+jenes
+jetzt
+kann
+kannst
+können
+könnt
+machen
+mein
+meine
+mit
+muß
+mußt
+musst
+müssen
+müßt
+nach
+nachdem
+nein
+nicht
+nun
+oder
+seid
+sein
+seine
+sich
+sie
+sind
+soll
+sollen
+sollst
+sollt
+sonst
+soweit
+sowie
+und
+unser
+unsere
+unter
+vom
+von
+vor
+wann
+warum
+was
+weiter
+weitere
+wenn
+wer
+werde
+werden
+werdet
+weshalb
+wie
+wieder
+wieso
+wir
+wird
+wirst
+wo
+woher
+wohin
+zu
+zum
+zur
+über