adding support functions to commit

ML_ipython.py

@@ -0,0 +1,25 @@
+#!/usr/bin/env python
+"""
+Set up ipython environment for ML testing
+
+@author: Mary Miedema
+"""
+
+
+import yaml
+import numpy as np
+import map_reliability_support.likelihood_biden as lhood
+
+with open('cfgbeta3.yml', 'r') as ymlfile:
+    cfg = yaml.load(ymlfile)
+
+#testML = lhood.ML_reliability(cfg,'sub03','one_jitter',55) 
+testML = lhood.ML_reliability(cfg,'sub03','SEF_good',20)  
+
+testML.calc_reliability_measures()
+
+testML.map_reliability(0.9)
+testML.map_reliability(0.6)
+
+
+# wishlist: automatically copy cfg file to nifti output directory for settings reference