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The simplest, fastest repository for training/finetuning medium-sized GPTs.

Python 38,781 6,305 Updated Dec 9, 2024

Fast and flexible reference benchmarks

Shell 448 125 Updated Aug 14, 2024

The RedPajama-Data repository contains code for preparing large datasets for training large language models.

Python 4,625 349 Updated Dec 7, 2024

SQLite3 extension for read/write storage compression with Zstandard

C++ 171 10 Updated Jan 13, 2024

PRML algorithms implemented in Python

Jupyter Notebook 11,530 3,252 Updated Sep 27, 2024

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

C++ 227 30 Updated Aug 11, 2021

Preprocessing paired-end reads produced with experiment-specific protocols

C 32 2 Updated Jun 28, 2018

Statistical Rethinking course and book package

R 2,205 606 Updated Aug 23, 2024

Bioinformatic infrastructure libraries

Go 78 17 Updated Aug 18, 2020

Microassembly based somatic variant caller for NGS data

C 154 33 Updated Jun 23, 2022

R rules for Bazel

Starlark 40 18 Updated Oct 3, 2024

A General-Purpose Counting Filter: Counting Quotient Filter

C 127 36 Updated Aug 3, 2023

Travis CI and deployment service to build PDF from LaTeX document.

169 34 Updated Apr 23, 2021

The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.

C++ 18 4 Updated Feb 26, 2022

A code-searching tool similar to ack, but faster.

C 26,309 1,427 Updated Jun 16, 2024

A hash map using the BooPHF perfect hash function

C++ 12 2 Updated Sep 25, 2016

Self-contained, multi-threaded fasta/q parser

C++ 43 8 Updated Oct 3, 2024

Automatically exported from code.google.com/p/smhasher

C++ 2,717 473 Updated Nov 14, 2024

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

C++ 92 16 Updated Nov 6, 2024

Signal-level algorithms for MinION data

C++ 577 159 Updated Aug 5, 2023

Minimal and clean examples of machine learning algorithms implementations

Python 10,773 1,777 Updated Mar 30, 2023

scaling, counting, bloom filter library

C 968 117 Updated Oct 26, 2019

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which wil…

C++ 276 50 Updated May 9, 2024

RTG Core: Software for alignment and analysis of next-gen sequencing data.

Java 45 11 Updated Jan 22, 2024

Shellscript to delete orphaned docker volumes

Shell 1,439 197 Updated Nov 3, 2024

a minimal C++ interval tree implementation

C++ 229 70 Updated Mar 11, 2021

Docker images of bioinformatics software

Makefile 21 Updated Jun 15, 2017

A single molecule sequence assembler for genomes large and small.

C++ 667 179 Updated Dec 19, 2024
TeX 2 Updated Jul 30, 2015

Library of different Bloom filters in Java with optional Redis-backing, counting and many hashing options.

Java 846 244 Updated Aug 6, 2024
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