base app

.dockerignore

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+.RData
+.Rhistory

.github/workflows/docker-publish.yml

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+name: Docker
+
+on:
+  push:
+    # Publish `master` as Docker `latest` image.
+    branches:
+      - master
+      - test
+
+    # Publish `v1.2.3` tags as releases.
+    tags:
+      - v*
+
+  # Run tests for any PRs.
+  pull_request:
+
+env:
+  IMAGE_NAME: mat-twitter-score-analyzer
+
+jobs:
+  # Run tests.
+  # See also https://docs.docker.com/docker-hub/builds/automated-testing/
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Run tests
+        run: |
+          if [ -f docker-compose.test.yml ]; then
+            docker-compose --file docker-compose.test.yml build
+            docker-compose --file docker-compose.test.yml run sut
+          else
+            docker build . --file Dockerfile --build-arg NPM_GITHUB_READ=${{ secrets.CR_PAT }}
+          fi
+
+  # Push image to GitHub Packages.
+  # See also https://docs.docker.com/docker-hub/builds/
+  push:
+    # Ensure test job passes before pushing image.
+    needs: test
+
+    runs-on: ubuntu-latest
+    if: github.event_name == 'push'
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Build image
+        run: docker build . --file Dockerfile --tag $IMAGE_NAME --build-arg NPM_GITHUB_READ=${{ secrets.CR_PAT }}
+
+      - name: Log into GitHub Container Registry
+        run: echo "${{ secrets.CR_PAT }}" | docker login https://ghcr.io -u ${{ github.actor }} --password-stdin
+
+      - name: Push image to GitHub Container Registry
+        run: |
+          IMAGE_ID=ghcr.io/${{ github.repository_owner }}/$IMAGE_NAME
+
+          # Change all uppercase to lowercase
+          IMAGE_ID=$(echo $IMAGE_ID | tr '[A-Z]' '[a-z]')
+
+          # Strip git ref prefix from version
+          VERSION=$(echo "${{ github.ref }}" | sed -e 's,.*/\(.*\),\1,')
+
+          # Strip "v" prefix from tag name
+          [[ "${{ github.ref }}" == "refs/tags/"* ]] && VERSION=$(echo $VERSION | sed -e 's/^v//')
+
+          # Use Docker `latest` tag convention
+          [ "$VERSION" == "master" ] && VERSION=latest
+          [ "$VERSION" == "test" ] && VERSION=test
+
+          echo IMAGE_ID=$IMAGE_ID
+          echo VERSION=$VERSION
+
+          docker tag $IMAGE_NAME $IMAGE_ID:$VERSION
+          docker push $IMAGE_ID:$VERSION

.gitignore

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+.RData
+.Rhistory

Dockerfile

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+FROM rocker/r-ver:latest
+
+ARG NPM_GITHUB_READ
+ENV NPM_GITHUB_READ=$NPM_GITHUB_READ
+WORKDIR /usr/src/app
+COPY . .
+
+RUN apt-get update && apt-get -y install libglu1 libxml2 libglpk-dev
+
+RUN install2.r --error shiny
+RUN install2.r --error shinythemes
+RUN install2.r --error ade4
+RUN install2.r --error vegan
+RUN install2.r --error vegan3d
+RUN install2.r --error polycor
+RUN install2.r --error psych
+RUN install2.r --error BayesLCA
+RUN install2.r --error igraph
+
+ENV PORT=8080
+LABEL org.opencontainers.image.source https://github.com/zabkwak/mat-twitter-score-analyzer
+EXPOSE 8080
+
+CMD [ "Rscript", "main.R" ]

README.md

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+# mat-twitter-score-analyzer
+The visualization of affinity data from [mat-twitter-downloader](https://github.com/zabkwak/mat-twitter-downloader). It's based on shiny app.
+
+## Development
+### Requirements
+- R (Rscript)
+#### Ubuntu
+- libglu1
+- libxml2
+- libbglpk-dev
+
+### Installation & test run
+```bash
+git clone [email protected]:zabkwak/mat-twitter-score-analyzer.git
+cd mat-twitter-score-analyzer
+Rscript -e "install.packages(c('shiny', 'shinythemes', 'ade4', 'vegan', 'vegan3d', 'polycor', 'psych', 'BayesLCA', 'igraph))"
+Rscript main.R
+```
+The app will be accessible on `http://localhost:8080`.
+
+## Settings
+No additional configuration is needed.
+
+## Docker
+The [image](https://github.com/zabkwak/mat-twitter-score-analyzer/pkgs/container/mat-twitter-score-analyzer) is stored in GitHub packages registry and the app can be run in the docker environment.
+```bash
+docker pull ghcr.io/zabkwak/mat-twitter-score-analyzer:latest
+```
+
+```bash
+docker run \
+--name=mat-twitter-score-analyzer \
+-p 127.0.0.1:8080:8080 \
+-d \
+--restart=unless-stopped \
+--name=mat-twitter-score-analyzer
+ghcr.io/zabkwak/mat-twitter-score-analyzer:latest  
+```

main.R

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+library(shiny)
+
+port <- Sys.getenv("PORT")
+
+if (exists(port)) {
+	port <- strtoi(port)
+} else {
+	port <- 8080
+}
+
+shiny::runApp(getwd(), port, FALSE, "0.0.0.0")