VolumeCut 2.0

+ Added Graphical interface using appdesigner
+ Packaged into a matlab App
+ Render the source and cut volumes using MATLAB's 3D renderer
+ Added custom smoothing of interpolated surfaces
+ Added custom Z offset for each individual surface
+ Added project website

ChangeLog.m

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+%% VolumeCut: Cut images along custom surfaces
+% Copyright (C) 2017,2018 Luca Della Santina
+%
+%  This file is part of VolumeCut
+%
+% This program is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% This program is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with this program.  If not, see <http://www.gnu.org/licenses/>.
+% This software is released under the terms of the GPL v3 software license
+%
+%
+% *Change log*
+%
+% _*Version 2.0*            created on 2018-10-07 by Luca Della Santina_
+%
+%  + Added Graphical interface using appdesigner
+%  + Packaged into a matlab App
+%  + Render the source and cut volumes using MATLAB's 3D renderer
+%  + Added custom smoothing of interpolated surfaces
+%  + Added custom Z offset for each individual surface
+%  + Added project website
+%
+% _*Version 1.5*            created on 2018-09-19 by Luca Della Santina_
+%
+%  + Offset1 and offset2 can nowbe appliedto all cutting modes
+%  + Both masks used to slice the volume are saved as -part1mask -part2mask
+%
+% _*Version 1.4.1*            created on 2017-11-29 by Luca Della Santina_
+%
+%  + Fixed bug in applying offset1 and offset2 to calculade midle plane
+%
+% _*Version 1.4*             created on 2017-11-20 by Luca Della Santina_
+%
+%  + Allows to cut at a custom distance from references planes when mode=1
+%  + Added progress bars and verbose output for all the processing steps
+%  + Added copyright statement
+%  % Exmplained the three cutting modes more clearly
+%
+% _*Version 1.3*             created on 2017-10-01 by Luca Della Santina_
+%
+%  % Fixed double extension inserted into filenames, i.e. ".tif-part1.tif"
+%  + Added new modes of slicing when using 2 set of coordinates
+%
+%    Plane #1<->middle<->#2
+%    Part1: From beginning of plane #1 to halfway between planes
+%    Part2: From halfway between planes to plane #2
+%
+%    Stack Start<->middle<->End mode:
+%    Part1: From beginning of volume to halfway between planes
+%    Part2: From halfway between planes to end of volume
+%
+%    Inside/Outside planes mode:
+%    Part1: volume outside the planes delimited by the coordinate sets
+%    Part2: volume inside the planes delimited by the coordinate sets
+%
+% _*Version 1.2.1*             created on 2017-09-07 by Luca Della Santina_
+%
+%  + Reformatted documentation using proper MATLAB markup format
+%
+% _*Version 1.2*               created on 2017-09-07 by Luca Della Santina_
+%
+%  + When cutting with 2 set of reference points output stacks are:
+%    "-part1.tif" voxels between top and middle surfaces (g1<->g3)
+%    "-part2.tif" voxels between middle and bottom surfaces (g3<->g2)
+%  + Allow Surface 1 and Surface 2 to be loaded opposite than expected
+%
+% _*Version 1.1*               created on 2017-09-01 by Luca Della Santina_
+%
+%  % bug fixed the file selector for reference points
+%
+% _*Version 1.0*               created on 2017-09-01 by Luca Della Santina_
+%