[WIP] CI builds

.ci_support/README

@@ -0,0 +1 @@
+This file is automatically generated by conda-smithy.  To change any matrix elements, you should change conda-smithy's input conda_build_config.yaml and re-render the recipe, rather than editing these files directly.

.ci_support/linux_python2.7.yaml

@@ -0,0 +1,14 @@
+c_compiler:
+- toolchain_c
+ffmpeg:
+- '4.0'
+numpy:
+- '1.9'
+pin_run_as_build:
+  ffmpeg:
+    max_pin: x.x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+python:
+- '2.7'

.ci_support/linux_python3.5.yaml

@@ -0,0 +1,14 @@
+c_compiler:
+- toolchain_c
+ffmpeg:
+- '4.0'
+numpy:
+- '1.9'
+pin_run_as_build:
+  ffmpeg:
+    max_pin: x.x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+python:
+- '3.5'

.ci_support/linux_python3.6.yaml

@@ -0,0 +1,14 @@
+c_compiler:
+- toolchain_c
+ffmpeg:
+- '4.0'
+numpy:
+- '1.9'
+pin_run_as_build:
+  ffmpeg:
+    max_pin: x.x
+  python:
+    min_pin: x.x
+    max_pin: x.x
+python:
+- '3.6'

.circleci/build_steps.sh

@@ -0,0 +1,34 @@
+#!/usr/bin/env bash
+
+# PLEASE NOTE: This script has been automatically generated by conda-smithy. Any changes here
+# will be lost next time ``conda smithy rerender`` is run. If you would like to make permanent
+# changes to this script, consider a proposal to conda-smithy so that other feedstocks can also
+# benefit from the improvement.
+
+set -xeuo pipefail
+export PYTHONUNBUFFERED=1
+
+cat >~/.condarc <<CONDARC
+
+channels:
+ - loopbio
+ - conda-forge
+ - defaults
+
+conda-build:
+ root-dir: /home/conda/feedstock_root/build_artifacts
+
+show_channel_urls: true
+
+CONDARC
+
+# A lock sometimes occurs with incomplete builds. The lock file is stored in build_artifacts.
+conda clean --lock
+
+conda install --yes --quiet conda-forge-ci-setup=1 conda-build
+source run_conda_forge_build_setup
+
+conda build /home/conda/recipe_root -m /home/conda/feedstock_root/.ci_support/${CONFIG}.yaml --quiet
+upload_or_check_non_existence /home/conda/recipe_root loopbio --channel=main -m /home/conda/feedstock_root/.ci_support/${CONFIG}.yaml
+
+touch "/home/conda/feedstock_root/build_artifacts/conda-forge-build-done-${CONFIG}"

.circleci/config.yml

@@ -0,0 +1,62 @@
+version: 2
+
+jobs:
+  build_linux_python2.7:
+    working_directory: ~/test
+    machine: true
+    environment:
+      - CONFIG: "linux_python2.7"
+    steps:
+      - checkout
+      - run:
+          name: Fast finish outdated PRs and merge PRs
+          command: |
+            ./.circleci/fast_finish_ci_pr_build.sh
+            ./.circleci/checkout_merge_commit.sh
+      - run:
+          command: docker pull condaforge/linux-anvil
+      - run:
+          # Run, test and (if we have a BINSTAR_TOKEN) upload the distributions.
+          command: ./.circleci/run_docker_build.sh
+  build_linux_python3.5:
+    working_directory: ~/test
+    machine: true
+    environment:
+      - CONFIG: "linux_python3.5"
+    steps:
+      - checkout
+      - run:
+          name: Fast finish outdated PRs and merge PRs
+          command: |
+            ./.circleci/fast_finish_ci_pr_build.sh
+            ./.circleci/checkout_merge_commit.sh
+      - run:
+          command: docker pull condaforge/linux-anvil
+      - run:
+          # Run, test and (if we have a BINSTAR_TOKEN) upload the distributions.
+          command: ./.circleci/run_docker_build.sh
+  build_linux_python3.6:
+    working_directory: ~/test
+    machine: true
+    environment:
+      - CONFIG: "linux_python3.6"
+    steps:
+      - checkout
+      - run:
+          name: Fast finish outdated PRs and merge PRs
+          command: |
+            ./.circleci/fast_finish_ci_pr_build.sh
+            ./.circleci/checkout_merge_commit.sh
+      - run:
+          command: docker pull condaforge/linux-anvil
+      - run:
+          # Run, test and (if we have a BINSTAR_TOKEN) upload the distributions.
+          command: ./.circleci/run_docker_build.sh
+
+workflows:
+  version: 2
+  build_and_test:
+    jobs:
+      - build_linux_python2.7
+      - build_linux_python3.5
+      - build_linux_python3.6

ci_support/fast_finish_ci_pr_build.sh → .circleci/fast_finish_ci_pr_build.sh

@@ -1,4 +1,4 @@
 #!/bin/bash
 
-curl https://raw.githubusercontent.com/conda-forge/conda-forge-build-setup-feedstock/master/recipe/ff_ci_pr_build.py | \
+curl https://raw.githubusercontent.com/conda-forge/conda-forge-ci-setup-feedstock/master/recipe/ff_ci_pr_build.py | \
      python - -v --ci "circle" "${CIRCLE_PROJECT_USERNAME}/${CIRCLE_PROJECT_REPONAME}" "${CIRCLE_BUILD_NUM}" "${CIRCLE_PR_NUMBER}"

.circleci/run_docker_build.sh

@@ -0,0 +1,47 @@
+#!/usr/bin/env bash
+
+# PLEASE NOTE: This script has been automatically generated by conda-smithy. Any changes here
+# will be lost next time ``conda smithy rerender`` is run. If you would like to make permanent
+# changes to this script, consider a proposal to conda-smithy so that other feedstocks can also
+# benefit from the improvement.
+
+set -xeuo pipefail
+
+FEEDSTOCK_ROOT=$(cd "$(dirname "$0")/.."; pwd;)
+RECIPE_ROOT=$FEEDSTOCK_ROOT/recipe
+
+docker info
+
+# In order for the conda-build process in the container to write to the mounted
+# volumes, we need to run with the same id as the host machine, which is
+# normally the owner of the mounted volumes, or at least has write permission
+export HOST_USER_ID=$(id -u)
+# Check if docker-machine is being used (normally on OSX) and get the uid from
+# the VM
+if hash docker-machine 2> /dev/null && docker-machine active > /dev/null; then
+    export HOST_USER_ID=$(docker-machine ssh $(docker-machine active) id -u)
+fi
+
+ARTIFACTS="$FEEDSTOCK_ROOT/build_artifacts"
+
+if [ -z "$CONFIG" ]; then
+    echo "Need to set CONFIG env variable"
+    exit 1
+fi
+
+mkdir -p "$ARTIFACTS"
+DONE_CANARY="$ARTIFACTS/conda-forge-build-done-${CONFIG}"
+rm -f "$DONE_CANARY"
+
+docker run -it \
+           -v "${RECIPE_ROOT}":/home/conda/recipe_root \
+           -v "${FEEDSTOCK_ROOT}":/home/conda/feedstock_root \
+           -e CONFIG \
+           -e BINSTAR_TOKEN \
+           -e HOST_USER_ID \
+           condaforge/linux-anvil \
+           bash \
+           /home/conda/feedstock_root/.circleci/build_steps.sh
+
+# verify that the end of the script was reached
+test -f "$DONE_CANARY"

.gitattributes

@@ -1,5 +1,7 @@
 * text=auto
 
+*.patch binary
+*.diff binary
 meta.yaml text eol=lf
 build.sh text eol=lf
 bld.bat text eol=crlf

.github/CONTRIBUTING.md

@@ -0,0 +1,15 @@
+Thanks for your interest in helping out conda-forge.
+
+Whether you are brand new or a seasoned maintainer, we always appreciate
+feedback from the community about how we can improve conda-forge. If you
+are submitting a PR or issue, please fill out the respective template. Should
+any questions arise please feel free to ask the maintainer team of the
+respective feedstock or reach out to `@conda-forge/core` for more complex
+issues.
+
+In the case of any issues reported, please be sure to demonstrate the relevant
+issue (even if it is an absence of a feature). Providing this information will
+help busy maintainers understand what it is you hope to accomplish. Also this
+will help provide them clues as to what might be going wrong. These examples
+can also be reused as tests in the build to ensure further packages meet these
+criteria. This is requested to help you get timely and relevant feedback. :)

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,25 @@
+<!--
+Thanks for reporting your issue.
+Please fill out the sections below.
+-->
+Issue:
+
+<br/>
+Environment (<code>conda list</code>):
+<details>
+
+```
+$ conda list
+
+```
+</details>
+
+<br/>
+Details about  <code>conda</code> and system ( <code>conda info</code> ):
+<details>
+
+```
+$ conda info
+
+```
+</details>

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,18 @@
+<!--
+Thank you for pull request.
+Below are a few things we ask you kindly to self-check before getting a review. Remove checks that are not relevant.
+-->
+Checklist
+* [ ] Used a fork of the feedstock to propose changes
+* [ ] Bumped the build number (if the version is unchanged)
+* [ ] Reset the build number to `0` (if the version changed)
+* [ ] [Re-rendered]( https://conda-forge.org/docs/conda_smithy.html#how-to-re-render ) with the latest `conda-smithy` (Use the phrase <code>@<space/>conda-forge-admin, please rerender</code> in a comment in this PR for automated rerendering)
+* [ ] Ensured the license file is being packaged.
+
+<!--
+Please note any issues this fixes using [closing keywords]( https://help.github.com/articles/closing-issues-using-keywords/ ):
+-->
+
+<!--
+Please add any other relevant info below:
+-->

.gitignore

@@ -1,3 +1,3 @@
 *.pyc
 
-build_artefacts
+build_artifacts

LICENSE → LICENSE.txt

@@ -1,5 +1,5 @@
 BSD 3-clause license
-Copyright (c) 2015-2017, conda-forge
+Copyright (c) 2015-2018, conda-forge
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: