feat(ingest): Allow option to use nextclade sort to identify segments in multi-segmented viruses #761
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| name: ingest-tests | |
| on: | |
| # test | |
| pull_request: | |
| paths: | |
| - "ingest/**" | |
| - ".github/workflows/ingest-tests.yml" | |
| push: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| concurrency: | |
| group: ci-${{ github.ref == 'refs/heads/main' && github.run_id || github.ref }}-ingest-tests | |
| cancel-in-progress: true | |
| jobs: | |
| unitTests: | |
| name: Unit Tests | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: ingest/environment.yml | |
| micromamba-version: 'latest' | |
| init-shell: >- | |
| bash powershell | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| - name: Run tests | |
| run: | | |
| micromamba activate loculus-ingest | |
| pytest tests/ | |
| shell: micromamba-shell {0} | |
| working-directory: ingest |