Stars
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
Blazing fast inference of PLN models built on top of Python and PyTorch
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Network construction, analysis, and comparison for microbial compositional data
Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
🍄 Qiime2 ITS classifiers for the UNITE database
A GlobalProtect VPN client for Linux, written in Rust, based on OpenConnect and Tauri, supports SSO with MFA, Yubikey, and client certificate authentication, etc.
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
A curated list of awesome ggplot2 tutorials, packages etc.
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
This repo collects the list of learning online resources related to microbiome computational science and tools.
🚥 Visualizing publication-quality multiple sequence alignment using ggplot2
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Build a partitioned pangenome graph from microbial genomes
Bioinformatics tool to find integrons in bacterial genomes
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
Curation of Antibiotic Resistance Genes by using crowdsourcing
This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
Open source code for AlphaFold 2.