updating makefiles

.travis.yml

@@ -1,4 +1,12 @@
-language: c
+language: python
+python:
+  - "2.7"
+  - "3.4"
+  - "3.5"
+  - "3.6"      # current default Python on Travis CI
+  - "3.7"
+  - "3.8"
+
 git:
   submodules: true
 #install: make get-deps  # 
@@ -9,10 +17,12 @@ before_install:
   - sudo apt-get update
   - sudo apt-get install -y check 
   - sudo apt-get install -y autotools-dev 
+  - sudo apt-get install -y python-dev 
 install: 
   - autoreconf
 script:
-  - "mkdir build; cd build; ../configure && make && make check"
+  - pip install -r requirements.txt
+  - pip install .
 
 branches:
   only:

Dockerfile

@@ -7,11 +7,11 @@ RUN apt-get update && apt-get install -y \
     giflib-dbg \
     check \
     build-essential \
+    python-dev \
     automake  && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/*
-RUN git clone --recursive https://github.com/leomrtns/super_distance.git && \
-    mkdir build && \
-    cd build && \
-    ../super_distance/configure --prefix=/ && \
-    make && make install
+RUN git clone --recursive https://github.com/leomrtns/tauari.git && \
+    cd tauari && \
+    pip install -r requirements.txt && \ 
+    pip install . 

autom4te.cache/output.1

@@ -1,6 +1,6 @@
 @%:@! /bin/sh
 @%:@ Guess values for system-dependent variables and create Makefiles.
-@%:@ Generated by GNU Autoconf 2.69 for tauari_c 1.0.0.
+@%:@ Generated by GNU Autoconf 2.69 for tauari_c 0.0.1.
 @%:@
 @%:@ Report bugs to <[email protected]>.
 @%:@ 
@@ -590,8 +590,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='tauari_c'
 PACKAGE_TARNAME='tauari_c'
-PACKAGE_VERSION='1.0.0'
-PACKAGE_STRING='tauari_c 1.0.0'
+PACKAGE_VERSION='0.0.1'
+PACKAGE_STRING='tauari_c 0.0.1'
 PACKAGE_BUGREPORT='[email protected]'
 PACKAGE_URL='https://github.com/quadram-institute-bioscience/tauari'
 
@@ -1365,7 +1365,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures tauari_c 1.0.0 to adapt to many kinds of systems.
+\`configure' configures tauari_c 0.0.1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1436,7 +1436,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of tauari_c 1.0.0:";;
+     short | recursive ) echo "Configuration of tauari_c 0.0.1:";;
    esac
   cat <<\_ACEOF
 
@@ -1564,7 +1564,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-tauari_c configure 1.0.0
+tauari_c configure 0.0.1
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1933,7 +1933,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by tauari_c $as_me 1.0.0, which was
+It was created by tauari_c $as_me 0.0.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -2805,7 +2805,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE='tauari_c'
- VERSION='1.0.0'
+ VERSION='0.0.1'
 
 
 cat >>confdefs.h <<_ACEOF
@@ -14272,7 +14272,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by tauari_c $as_me 1.0.0, which was
+This file was extended by tauari_c $as_me 0.0.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -14339,7 +14339,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-tauari_c config.status 1.0.0
+tauari_c config.status 0.0.1
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

autom4te.cache/output.3

@@ -1,6 +1,6 @@
 @%:@! /bin/sh
 @%:@ Guess values for system-dependent variables and create Makefiles.
-@%:@ Generated by GNU Autoconf 2.69 for tauari_c 1.0.0.
+@%:@ Generated by GNU Autoconf 2.69 for tauari_c 0.0.1.
 @%:@
 @%:@ Report bugs to <[email protected]>.
 @%:@ 
@@ -590,8 +590,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='tauari_c'
 PACKAGE_TARNAME='tauari_c'
-PACKAGE_VERSION='1.0.0'
-PACKAGE_STRING='tauari_c 1.0.0'
+PACKAGE_VERSION='0.0.1'
+PACKAGE_STRING='tauari_c 0.0.1'
 PACKAGE_BUGREPORT='[email protected]'
 PACKAGE_URL='https://github.com/quadram-institute-bioscience/tauari'
 
@@ -1365,7 +1365,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures tauari_c 1.0.0 to adapt to many kinds of systems.
+\`configure' configures tauari_c 0.0.1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1436,7 +1436,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of tauari_c 1.0.0:";;
+     short | recursive ) echo "Configuration of tauari_c 0.0.1:";;
    esac
   cat <<\_ACEOF
 
@@ -1564,7 +1564,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-tauari_c configure 1.0.0
+tauari_c configure 0.0.1
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1933,7 +1933,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by tauari_c $as_me 1.0.0, which was
+It was created by tauari_c $as_me 0.0.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -2805,7 +2805,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE='tauari_c'
- VERSION='1.0.0'
+ VERSION='0.0.1'
 
 
 cat >>confdefs.h <<_ACEOF
@@ -14272,7 +14272,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by tauari_c $as_me 1.0.0, which was
+This file was extended by tauari_c $as_me 0.0.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -14339,7 +14339,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-tauari_c config.status 1.0.0
+tauari_c config.status 0.0.1
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"