MicroscopyPipeline

This repo has been superseeded by ConfluentFUCCI and is now archived

Please check out the now peer-reviewed ConfluentFUCCI or the accomnying paper

Left empty on purpose

Pipeline

Name		Name	Last commit message	Last commit date
Latest commit History 70 Commits
containers		containers
dask		dask
data/fucci_60_frames		data/fucci_60_frames
docs		docs
examples		examples
experiments		experiments
models		models
wip		wip
.gitignore		.gitignore
README.md		README.md
TODO.md		TODO.md
WORKFLOW.md		WORKFLOW.md
requirements.txt		requirements.txt
run_analysis.py		run_analysis.py
run_segmentation.py		run_segmentation.py
run_track_viewer.py		run_track_viewer.py
run_tracking.py		run_tracking.py
run_velocity_field_viewer.py		run_velocity_field_viewer.py
setup.py		setup.py
trackmate_utils.py		trackmate_utils.py
utils.py		utils.py
walkthrough.ipynb		walkthrough.ipynb
walkthrough2.ipynb		walkthrough2.ipynb
walkthrough3.ipynb		walkthrough3.ipynb