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Commits on Apr 23, 2019

• Add pre-commit hooks

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• Add function to generate random timeseries

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• Add conda env file

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• Add computation operations

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• Add utilities

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• Add cluster wait function

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• Add setup class for running benchmarks

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• add initial run

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• Merge pull request #4 from andersy005/master

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Commits on May 5, 2019

• add new results

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• add new results

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• Add plots for results

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• Update plots

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• Merge pull request #5 from andersy005/master

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Commits on May 13, 2019

• add new results

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• Merge pull request #8 from andersy005/master

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Commits on May 22, 2019

• Add chunking_scheme parameter

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• remove notebook

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• add more runs

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Commits on May 23, 2019

• add results for more runs

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• add more results

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• more runs

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• add runs for 512 MB chunk size

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• add weak scaling plots

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• add post build script

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• Merge pull request #9 from andersy005/master

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• update plots

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• Merge pull request #10 from andersy005/master

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Commits on Jun 7, 2019

• modification to run benchmark on 'hal'

  

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• modification to run benchmark on 'hal'

  

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• initial benchmark result on 'hal'

  

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• conda enviroment used to plot on my mac'

  

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Commits on Jun 13, 2019

• update yml file for conda enviroment

  

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• Delete pangeo_yml

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• modified pangeobench.yml

  

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• Merge branch 'master' of https://github.com/tinaok/benchmarking

  

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• update pangeobench.yml

  

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• modified: pangeobench.yml

  

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• modified: pangeobench.yml

  

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Commits on Jun 14, 2019

• modified: pangeobench.yml

  

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• modification on util.py

  

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Commits on Jun 20, 2019

• add machine variable for plot_result, and created plot_results_machines.ipynb

  

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Commits on Aug 1, 2019

• Merge pull request #11 from tinaok/master

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• Adding 'maxmemory per node, maxcore per node' for specifying HPC cluster's node configuration.

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Commits on Aug 9, 2019

• Modification to include machine specific configuration.

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Commits on Aug 13, 2019

• hal benchmarking result: by blocking hal one full node=24c 128g memory

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• change name hal bench

  

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Commits on Aug 14, 2019

• Adding bug fix : ensuring that each worker process only have one threads

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• add more comments in utils.py

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• Merge pull request #12 from tinaok/master

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Commits on Aug 21, 2019

• Idial test case to mesure the slowdown only due to the communication between nodes, and parallel orchestration by dask would be the case for using only one dask worker.

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• update plot and comments

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Commits on Aug 22, 2019

• adding chunk_per_worker as variable for a test (before it was only possible to just one chunk per worker)

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• new test series on hal

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• still test version of plotting, but have subplot function ready

  

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• Merge branch 'master' of https://github.com/tinaok/benchmarking

  

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Commits on Aug 23, 2019

• created cheyenne.yaml for benchmarking in cheyenne

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• Merge branch 'master' of https://github.com/tinaok/benchmarking

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• draft commit, before weekend.

  

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Commits on Aug 25, 2019

• Add idias for adding IO bench

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• Updating idias for ops.py for adding IO bench

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Commits on Aug 28, 2019

• deleting unused test results and analysis

  

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• Cleaning up hal test configurations

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• cleaning notebook for submitting test jobs on hal

  

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• cleaning notebook for submitting test jobs on hal

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• Merge branch 'master' of https://github.com/tinaok/benchmarking

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• cleaning the plots

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• adding new plotting notebook. beta version.

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• lazy bug fix for issue 14 and 15

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Commits on Aug 30, 2019

• adding big chunk with small nodes tests to make figures

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• some more computing result beeing added

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Commits on Sep 5, 2019

• addding some more hal computation results

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• take out crashed result, results-halrerun/compute_study_2019-09-03_1150.33_.csv

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Commits on Sep 7, 2019

• Merge pull request #13 from tinaok/master

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• Rearrange outputs

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• Use logging module for logging instead of print

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• Fixes #14, Fixes #15

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• Add command line utility

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• temporal_mean -> spatial_mean, global_mean -> temporal_mean

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• Update environment and README

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• Fix typo

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• Merge pull request #19 from andersy005/rearange-output

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• Merge branch 'master' of github.com:pangeo-data/benchmarking into cli

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• Fix typo

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• Merge pull request #20 from andersy005/cli

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• Fix pandas date out of range

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• Add Cheyenne results

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• add wrangler results

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• Merge pull request #22 from andersy005/master

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• Merge branch 'master' of github.com:andersy005/benchmarking into wrangler

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• update wrangler config

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• Update README.md

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• Merge pull request #23 from andersy005/wrangler

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Commits on Sep 9, 2019

• Merge pull request #1 from pangeo-data/master

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Commits on Sep 10, 2019

• adding some more benchmark config for cheyenne and reorganising directory for plotting results

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Commits on Sep 11, 2019

• add new cheyenne results

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• Merge pull request #24 from tinaok/master

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• Merge pull request #2 from andersy005/more-cheyenne-computation

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• Merge branch 'master' of github.com:pangeo-data/benchmarking into more-cheyenne-computation

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• Use a single config file

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• Merge pull request #25 from andersy005/more-cheyenne-computation

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• Fixes #27

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Commits on Sep 12, 2019

• Merge pull request #28 from andersy005/patch/operation-renaming

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• Merge pull request #3 from pangeo-data/master

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Commits on Oct 10, 2019

• commiting notebooks used to create figures for the paper

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• Merge pull request #31 from tinaok/master

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• updating config files for hal

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• update jupyter notebook running file for hal

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• updating hal.ipynb for repeated benchmark on hal

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• updating script for making figures for hal

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• first results from hal with newer benchmarking method

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• Merge branch 'master' of https://github.com/tinaok/benchmarking

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• intermediate results hal

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• adding some new result with hourly benchmarks on hal

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• updating analysis on hal with 1H & 1D datasets

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• adding results

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Commits on Oct 11, 2019

• add more results with 1H , weighted computation from HAL

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• add more results with 1H , weighted computation from HAL

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• more results

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• Merge branch 'master' of https://github.com/tinaok/benchmarking

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• Move daily data sets computing result done on hal in a directory: results/hal1D/xxx

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• keep the old name of directory for original hal's computational result with daily dataset, & no coefficients for spatial mean.

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• reverifying figures for camera ready proof.

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• Update readme

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• adding empty jupyter notebook for running benchmark from jupyter notebook

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• Merge pull request #32 from tinaok/master

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• issue #33

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• Merge pull request #34 from tinaok/master

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• adding benchmarking results using daily data set (with coefficients introduced in 7th Sept)

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• cleaning script for issue #37

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• fixing issue #37 and re-plot the result.

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• Merge pull request #38 from tinaok/master

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Commits on Jan 16, 2020

• Update README.md

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Commits on Feb 20, 2020

• test

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• test again

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• see if upstream set

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• test hook with tab

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• reomve test_hook.py

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• remove test.md

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Commits on Mar 23, 2020

• add pip package setup.py

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• Update setup.py

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Commits on Mar 30, 2020

• add install_req

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Commits on Mar 31, 2020

• Update setup.py

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• Update setup.py

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• Make the repository pip installable (#40)

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Commits on Apr 1, 2020

• Create main.yaml

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• Merge branch 'pip-pack'

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• added actions/main.yaml

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• modified pre-commit

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• removed blank line in pre-commit-hook

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• import find_package

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• resort imports

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• resort imports

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• reorder imports

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• reorder imports

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• reorder sort

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• add blank line

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• add comments

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• add click as third party

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• changed first party module

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• reorder import

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Commits on Apr 2, 2020

• reorder import

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• switch Python3 toPython

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• reorder

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• reorder

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• add one line

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• remove first party

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• add comments

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• install seed-isort

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• add requirements to solve third party click

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• install requirements.txt in main.yaml

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• tested isort:skip

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Commits on Apr 3, 2020

• Create pythonpublish.yml

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Commits on Apr 6, 2020

• add click

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• Create code style action and python publish action (#41)

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• Merge pull request #44 from NCAR/master

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