feat: SJIP-964 add export endpoints for transcriptomics and remove aw…

…aitjs and refactor
kids-first · Nov 12, 2024 · b5fcbda · b5fcbda
1 parent 45d232f
commit b5fcbda
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Showing 20 changed files with 13,148 additions and 8,764 deletions.
diff --git a/.env.example b/.env.example
@@ -15,4 +15,7 @@ VARIANTS_SUGGESTIONS_INDEX_NAME=
 MAX_SET_CONTENT_SIZE=
 
 # Users-API URL
-USER_API_URL=
+USER_API_URL=
+
+# Datalake S3 bucket
+DATALAKE_S3_URL=
diff --git a/package-lock.json b/package-lock.json
diff --git a/package.json b/package.json
@@ -7,6 +7,7 @@
     "start": "node ./dist/src/index.js",
     "test": "jest",
     "test:watch": "jest --watch",
+    "test:silent": "jest --silent",
     "cleanAndBuild": "rm -rf ./dist/* && tsc --build",
     "lint": "eslint . --ext .ts",
     "lint:fix": "eslint . --ext .ts --fix",
@@ -38,7 +39,8 @@
     "@arranger/admin": "^2.19.4",
     "@arranger/middleware": "^2.19.4",
     "@arranger/server": "^2.19.4",
-    "@awaitjs/express": "^0.8.0",
+    "@aws-sdk/client-s3": "^3.689.0",
+    "@aws-sdk/s3-request-presigner": "^3.689.0",
     "@elastic/elasticsearch": "^7.11.0",
     "ajv": "^8.17.1",
     "cors": "2.8.5",