feat: SJIP-964 add export endpoints for transcriptomics (#219)

.env.example

@@ -15,4 +15,7 @@ VARIANTS_SUGGESTIONS_INDEX_NAME=
 MAX_SET_CONTENT_SIZE=
 
 # Users-API URL
-USER_API_URL=
+USER_API_URL=
+
+# Datalake S3 bucket
+DATALAKE_S3_URL=

package.json

@@ -7,6 +7,7 @@
     "start": "node ./dist/src/index.js",
     "test": "jest",
     "test:watch": "jest --watch",
+    "test:silent": "jest --silent",
     "cleanAndBuild": "rm -rf ./dist/* && tsc --build",
     "lint": "eslint . --ext .ts",
     "lint:fix": "eslint . --ext .ts --fix",
@@ -38,25 +39,26 @@
     "@arranger/admin": "^2.19.4",
     "@arranger/middleware": "^2.19.4",
     "@arranger/server": "^2.19.4",
-    "@awaitjs/express": "^0.8.0",
+    "@aws-sdk/client-s3": "^3.689.0",
+    "@aws-sdk/s3-request-presigner": "^3.689.0",
     "@elastic/elasticsearch": "^7.11.0",
     "ajv": "^8.17.1",
-    "cors": "2.8.5",
-    "dotenv": "^10.0.0",
-    "express": "^4.19.2",
+    "cors": "^2.8.5",
+    "dotenv": "^16.4.5",
+    "express": "^4.21.1",
     "filesize": "^3.6.1",
     "graphql-parse-resolve-info": "^4.13.0",
     "http-status-codes": "^2.3.0",
-    "keycloak-connect": "^25.0.4",
+    "keycloak-connect": "^26.0.5",
     "lodash": "^4.17.21",
     "node-cache": "^5.1.2",
     "node-fetch": "^2.6.5",
     "regenerator-runtime": "^0.14.0"
   },
   "devDependencies": {
-    "@types/cors": "^2.8.12",
-    "@types/express": "^4.17.13",
-    "@types/express-serve-static-core": "^4.17.24",
+    "@types/cors": "^2.8.17",
+    "@types/express": "^5.0.0",
+    "@types/express-serve-static-core": "^5.0.1",
     "@types/jest": "^27.0.2",
     "@types/lodash": "^4.14.171",
     "@types/node": "^16.3.2",