Update formatting again after using online markdown editor :)

anvil/README.md

@@ -9,65 +9,70 @@ Steps overview:
 4. Create a script to relaunch the anvil server python script if it's not already running
 5. Create a cron job to run your bash script every minute
 
-1. Install docker image of thermoengine on DigitalOcean droplet
----------------------------------------------------------------
+# 1. Install docker image of thermoengine on DigitalOcean droplet
 1. Create new droplet on DigitalOcean: Ubuntu 18.04
 	1. See https://www.digitalocean.com/docs/droplets/how-to/create/
-2. SSH into droplet 
+2. SSH into droplet (or use console accessed on DigitalOcean portal)
 	1. On your mac, open terminal
 	2. Type ssh root@[ip-address-of-droplet] (without brackets)
 	3. Enter your DO droplet password
 3. Install dependencies on DO droplet (see https://www.digitalocean.com/community/tutorials/how-to-install-and-use-docker-on-ubuntu-18-04)
-	1. sudo apt update
-	2. sudo apt install apt-transport-https ca-certificates curl software-properties-common
-	3. curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add -
-	4. sudo add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu bionic stable"
-	5. sudo apt update
-	6. apt-cache policy docker-ce
+```
+sudo apt update
+sudo apt install apt-transport-https ca-certificates curl software-properties-common
+curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add -
+sudo add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu bionic stable"
+sudo apt update
+apt-cache policy docker-ce
+```
 4. Install Docker on DO droplet:
-	1. sudo apt install docker-ce
-	2. sudo systemctl status docker
+```
+sudo apt install docker-ce
+sudo systemctl status docker
+```
 5. Allow docker commands without sudo:
-	1. sudo usermod -aG docker ${USER} (user will be root)
-	2. su - ${USER}
-	3. id -nG
+```
+sudo usermod -aG docker ${USER}
+su - ${USER}
+id -nG
+```
 6. Install the thermoengine docker image on the DO droplet:
-	1. docker pull registry.gitlab.com/enki-portal/thermoengine:latest
+```
+docker pull registry.gitlab.com/enki-portal/thermoengine:latest
+```
 
-2. Install dependencies on DO droplet
--------------------------------------
+# 2. Install dependencies on DO droplet
 1. Install anaconda3 on the DO droplet:
-	1. wget "https://repo.anaconda.com/archive/Anaconda3-2020.02-Linux-x86_64.sh"
-	2. bash Anaconda3-2020.02-Linux-x86_64.sh
+	1. ```wget "https://repo.anaconda.com/archive/Anaconda3-2020.02-Linux-x86_64.sh"```
+	2. ```bash Anaconda3-2020.02-Linux-x86_64.sh```
 2. Install screen and cron:
-	1. sudo apt-get install cron
+	1. ```sudo apt-get install cron```
 		1. It'll probably ask you what editor you want to use. We recommend nano, as does cron
-	2. sudo apt-get install screen
+	2. ```sudo apt-get install screen```
 
-3. Create a new screen and run the docker container
----------------------------------------------------
+# 3. Create a new screen and run the docker container
 1. Create a new screen and give it a name:
-	1. screen -S <name-of-your-screen>
+	1. ```screen -S <name-of-your-screen>```
 	2. Note: to detach from this screen at any time, press ctrl+a then ctrl+d
 	3. Note: to reattach to this screen at any time, type:
-		1. screen -r <name-of-your-screen>
+		1. ```screen -r <name-of-your-screen>```
 2. In your screen, run the docker image and give it a name:
-	1. docker run --name <some-container-name> --user root -it --rm registry.gitlab.com/enki-portal/thermoengine:latest bash
+	1. ```docker run --name <some-container-name> --user root -it --rm registry.gitlab.com/enki-portal/thermoengine:latest bash```
 3. In the docker container, clone the VESIcal repository as:
-	1. git clone https://github.com/kaylai/VESIcal.git
+	1. ```git clone https://github.com/kaylai/VESIcal.git```
 4. In the docker container, install the anvil server library and VESIcal:
-	1. pip install anvil-app-server
-	2. pip install VESIcal
+	1. ```pip install anvil-app-server```
+	2. ```pip install VESIcal```
 5. Detach from your screen:
 	1. ctrl+a then ctrl+d
 
-4. Create a script to relaunch the anvil server python script if it's not already running
------------------------------------------------------------------------------------------
+# 4. Create a script to relaunch the anvil server python script if it's not already running
 1. Use nano or your desired editor to create and start editing a file, let's call it launch_anvil_server.sh
 	1. nano launch_anvil_server.sh
 	2. Note: to save your file in nano use ctrl+o and then enter to confirm file name
 	3. Note: to exit nano use ctrl+x
 2. In that file put the following:
+```
 #!/bin/bash
 truncate -s 0 cronfile.log
 echo $(date)
@@ -77,14 +82,14 @@ else
         echo "starting anvil server anew"
         docker exec -i -w /app/VESIcal <some-container-name> python anvil_server.py
 fi
+```
 
-3. Note: "/app/VESIcal" is the path to the folder VESIcal cloned from the github repo (that lives inside the docker container). In the case of the thermoengine docker, you live in the /app folder, so the path is /app/VESIcal.
+4. Note: "/app/VESIcal" is the path to the folder VESIcal cloned from the github repo (that lives inside the docker container). In the case of the thermoengine docker, you live in the /app folder, so the path is /app/VESIcal.
 
-5. Create a cron job to run your bash script every minute
----------------------------------------------------------
+# 5. Create a cron job to run your bash script every minute
 1. Open up your crontab for editing with:
-	1. crontab -e
+```crontab -e```
 2. In your crontab add this line:
-* * * * * <path-to-your_bash_script> >> <path-to-a-place-you-like>/cronfile.log 2>&1
+```* * * * * <path-to-your_bash_script> >> <path-to-a-place-you-like>/cronfile.log 2>&1```
 3. Save and exit crontab (nano ctrl+o, enter, ctrl+x; vim esc wq)
 4. Tip: If you don't know where your bash script is, when not in the crontab, go to the directory with your bash script in it and type pwd. That's the path to that location.