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fix: fewer concurrent downloads so that Zenodo does not start blocking downloads #237

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2 changes: 1 addition & 1 deletion Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -63,7 +63,7 @@ conda: ## Create the conda environments
snakemake $(SMK_PARAMS) --conda-create-envs-only

download: ## Download the assemblies and COBS indexes
snakemake download $(SMK_PARAMS) -j 99999
snakemake download $(SMK_PARAMS) --restart-times 3 -j 99999

match: ## Match queries using COBS (queries -> candidates)
scripts/benchmark.py --log logs/benchmarks/match_$(DATETIME).txt "snakemake match $(SMK_PARAMS)"
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2 changes: 1 addition & 1 deletion config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,7 @@ max_ram_gb: 12

# maximum number of download threads at a time (note: too many might slow down download speed)
# WARNING: this parameter is ignored when running on a cluster
max_download_threads: 8
max_download_threads: 4
##################################################

##################################################
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