This project repository associated with the following manuscript:
- Luyao Kang, Leiyi Chen, Ziliang Li, Jianjun Wang, Kai Xue, Ye Deng, Manuel Delgado-Baquerizo, Yutong Song, Dianye Zhang, Guibiao Yang, Wei Zhou, Xuning Liu, Futing Liu and Yuanhe Yang* (2023). Patterns and drivers of prokaryotic communities in thermokarst lake water across Northern Hemisphere. (http://doi.org/10.1111/geb.13764 ).
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├── data1
├── qiime2 <-- output files from the qiime2
├── thermokarst-lakes-rep-seqs.qza <-- represent sequences output file from qiime2
└── thermokarst-lakes-table.qza <-- otutable output from qiime2
└── meta_data <-- relevant data necessary for reproducing results
├── meta_otu_table.txt <-- otu table file
├── taxonomy.txt <-- taxonomic table file
└── sample_data.txt <-- environmental table file
└── script
├── 1_composition_analysis.R <-- codes for taxonomic compositional analysis
├── 2_cor_DOM_taxa_fun.R <-- test the relationship between the dominant taxa and DOM properties
├── 3_comparison between PA & TP.R <-- codes for comparison analysis between pan-Arctic and Tibetan Plateau
├── 4_LCBD_analysis.R <-- codes for LCBD analysis
└── 5_FARPROTAX.R <-- codes for functional groups analysis