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Development #100

Merged
merged 12 commits into from
May 23, 2024
Merged

Development #100

merged 12 commits into from
May 23, 2024

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jyaacoub
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TCGA maf mutation mapping and GVPL_aflow with davis dataset

jyaacoub added 12 commits May 9, 2024 16:01
@jyaacoub
feat(processors): fasta_to_df
2ca0c85
@jyaacoub
chore: TCGA filtering/merging code #95
c54b67a
@jyaacoub
feat(analysis): combine_dataset_pids #95
5696a7a
@jyaacoub
style(tcga): fig histogram plot #95
946b62d
@jyaacoub
fix(datasets): davis GVPL_aflow #94
b046e4c 
Built dataset
@jyaacoub
feat(downloader): multithreading support + exponential backoff
10feaba
@jyaacoub
feat(Chain): __iter__() to yield chainID and seqence of a pdb
10ce1b2
@jyaacoub
fix(tcga): focus on pdbbind davis #95 #99
985d684 
Since we dont have a kiba GVPL dataset yet...
@jyaacoub
feat(tcga): msa for tcga muts #99 #95
5340ec8
@jyaacoub
results(davis): GVPL aflow model #90
61a9122 
Poor performance? not trained for long enough?
@jyaacoub
results: updated GVPL_aflow results #90
440742f 
Since its training got truncated I trained it for an additional 2000K epochs.
@jyaacoub
fix(figures): title_postfix for fig_combined
c124f0c
@jyaacoub jyaacoub merged commit 23c8ae1 into main May 23, 2024
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