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MITNANEX Public
MItocondrial NAnopore reads EXtractor De novo from WGS. It also assembles the mitogenome.
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Biocomp-BookClub Public
This is to follow the book Bioinformatics Algorithms
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pneumoPipe Public
Pipeline for Streptococcus pneumoniae assembly, annotation and serotyping using Illumina WGS
Shell UpdatedOct 1, 2024 -
SeroCall Public
Forked from knightjimr/SeroCallPneumococcal serotype quantification using NGS reads
Python GNU General Public License v3.0 UpdatedAug 20, 2024 -
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kraken2 Public
Forked from DerrickWood/kraken2This contains a modify version of the k2 file to download using https protocol libraries and taxonomy
C++ MIT License UpdatedMay 30, 2024 -
SRA-Metadata-Extractor Public
Tool intended to get SRA run accessions and its metadata for every Bioproject presented in a csv file.
Python UpdatedMay 9, 2024 -
learningProgPythonBio Public
Exercise in python for bioinformatic
Jupyter Notebook UpdatedApr 20, 2024 -
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tkparadigms Public
Forked from sjara/tkparadigmsTaskontrol behavioral paradigms from JaraLab.
Python UpdatedNov 12, 2023 -
NanoPlot Public
Forked from wdecoster/NanoPlotPlotting scripts for long read sequencing data
Python MIT License UpdatedOct 27, 2023 -
gbifSpecieLinkContructor Public
This tool is to build the link of the GBIF web page that describes a specie.
Python UpdatedJul 2, 2023 -
Internship_UO Public
This repository is for all my work done during my 1 year internship at University of Oregon.
CSS UpdatedMar 4, 2023 -
from_python_to_numpy Public
This repo is for upload all code related to the book "From Python to NumPy"
Jupyter Notebook UpdatedFeb 26, 2023 -
flask_technical_test Public
Technical test of a REST API for an Hospital
Python UpdatedMar 18, 2022 -
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BioinformaticCourse-Coursera Public
Repo for bioinformatic course of University of California San Diego in Coursera
Python UpdatedJan 5, 2022 -
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RNA-seq-demonstration Public
Forked from TheGreatJack/RNA-seq-demonstrationRNA-seq differential expression analysis practical demostration for undergrad students.
R UpdatedNov 26, 2021 -