[ci skip] Merge PR 32005

Merge PR bioconda#32005, commits were: * Merge branch 'bioconda:master' into rustybam * preping for a conda release * preping for a conda release * preping for a conda release * Merge branch 'bioconda:master' into rustybam * preping for a conda release * add rustybam * adding rustybam * adding rustybam
jscaber · Dec 18, 2021 · 0154db3 · 0154db3
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diff --git a/recipes/rustybam/build.sh b/recipes/rustybam/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash -e
+
+# TODO: Remove the following export when pinning is updated and we use
+#       {{ compiler('rust') }} in the recipe.
+export \
+    CARGO_NET_GIT_FETCH_WITH_CLI=true \
+    CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+export BINDGEN_EXTRA_CLANG_ARGS="${CFLAGS} ${CPPFLAGS} ${LDFLAGS}"
+
+cargo install --no-track --verbose --root "${PREFIX}" --path .
diff --git a/recipes/rustybam/meta.yaml b/recipes/rustybam/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "0.1.20" %}
+
+package:
+  name: rustybam
+  version: {{ version }}
+
+build:
+  number: 0
+  skip: True  # [osx]
+
+
+source:
+  url: https://github.com/mrvollger/rustybam/archive/v{{ version }}-conda.tar.gz
+  sha256: 55eb03684048cf8533215f7dc0f0dc76f0d86c8032b3937f104198a60a0b38e8
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - rust >=1.56.0
+    - clangdev
+    - pkg-config
+    - make
+    - cmake
+  host:
+    - gsl
+    - libcblas
+    - openssl
+    - zlib
+    - bzip2
+    - htslib
+  run:
+    - htslib
+
+test:
+  commands:
+    - rb --help
+
+
+about:
+  home: https://github.com/mrvollger/rustybam
+  license: MIT
+  summary: Mitchell Vollger's bioinformatics rust utilities.