initial code commit

DESCRIPTION

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+Package: rGOSSIS1
+Type: Package
+Title: GOSSIS: Global Open Source Severity of Illness Scale
+Version: 0.1.0
+Author: Jesse D. Raffa
+Maintainer: Jesse D. Raffa <[email protected]>
+Description: Global Open Source Severity of Illness Scale imputation and prediction code.
+License: MIT
+Encoding: UTF-8
+LazyData: true
+Imports: dplyr,
+    caret,
+    stringr
+RoxygenNote: 6.1.1

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+export(generate_formula)
+export(gpredict)
+export(impute_data)
+export(prepare_fit)
+export(preprocess_data)
+import(caret)
+import(dplyr)
+import(mgcv)
+import(stringr)
+importFrom(stats,na.pass)
+importFrom(stringr,str_split)

R/ap_dx.R

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+#' APACHE Diagnosis Map Dataset
+#'
+#' A mapping table used to map different kinds of admission diagnoses in a hiearchical structure.
+#'
+#' @docType data
+#' @usage data(ap_dx)
+#'
+#' @format An R data.frame
+#'
+#' @keywords datasets
+#'
+#' @example
+#' data(ap_dx)
+"ap_dx"

R/gossis1_ihmp.R

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+#' GOSSIS prediction model datasets
+#'
+#' A `gam` model with some elements stripped  used in GOSSIS in-hospital mortality prediction.
+#'
+#' @docType data
+#' @usage data(gossis1_ihmp)
+#'
+#' @format An R data.frame
+#'
+#' @keywords datasets
+#' @seealso gpredict
+#' @example
+#' # data(gossis1_ihmp)
+"gossis1_ihmp"

R/imputation_models.R

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+#' GOSSIS imputation model datasets
+#'
+#' A named list of imputation models used for GOSSIS.
+#'
+#' @docType data
+#' @usage data(imputation_models)
+#'
+#' @format An R data.frame
+#'
+#' @keywords datasets
+#' @seealso imputate_data
+#' @example
+#' # data(imputation_models)
+"imputation_models"

R/imputation_models_fac.R

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+#' GOSSIS imputation model datasets (factors variables only).
+#'
+#' A named list of imputation models used for GOSSIS (factors variables only).
+#'
+#' @docType data
+#' @usage data(imputation_models)
+#'
+#' @format An R data.frame
+#'
+#' @keywords datasets
+#' @seealso imputate_data
+#' @example
+#' # data(imputation_models_fac)
+"imputation_models_fac"