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A pubMLST process has gone awry and clobbered the Pasteurella multoci…
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…da#1 database files and left them empty. Disable Pasteurella multocida#1 in stringMLST for now, rebuild databases jordanlab/stringMLST_datasets#1
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ar0ch committed Mar 18, 2017
1 parent 9b458b4 commit 6962828
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2 changes: 1 addition & 1 deletion stringMLST.py
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Expand Up @@ -1199,7 +1199,7 @@ def checkParams(buildDB, predict, config, k, listMode, list, batch, dir, fastq1,
"orientia-tsutsugamushi" : "Orientia tsutsugamushi",
"ornithobacterium-rhinotracheale" : "Ornithobacterium rhinotracheale",
"paenibacillus-larvae" : "Paenibacillus larvae",
"pasteurella-multocida1" : "Pasteurella multocida#1",
#"pasteurella-multocida1" : "Pasteurella multocida#1",
"pasteurella-multocida2" : "Pasteurella multocida#2",
"pediococcus-pentosaceus" : "Pediococcus pentosaceus",
"photobacterium-damselae" : "Photobacterium damselae",
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