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updated readme
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jonas-fuchs committed Nov 17, 2023
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Expand Up @@ -70,7 +70,9 @@ options:
--delete, --no-delete
delete mutations that are present in all samples and their maximum frequency divergence is smaller than 0.5 (default: True)
-n None, --delete-n None
do not show mutations that occur n times or less (default: Do not delete)
do not show mutations that occur n times or less (default: Do not delete)
-z start stop, --zoom start stop
restrict the plot to a specific genomic region.
--sort, --no-sort sort sample names alphanumerically (default: False)
--min-cov 20 display mutations covered at least x time (only if per base cov tsv files are provided)
-v, --version show program's version number and exit
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