Clean up after SVN import

along_trk_stats/trk_add_sc.m → trk_add_sc.m

@@ -26,7 +26,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Apr 2010 $Rev$ $Date$
+% Apr 2010
 
 % Loop over # of tracks (slow...any faster way?)
 for iTrk=1:length(tracks)
@@ -42,4 +42,4 @@
 % Update header
 n_scalars_old    = header.n_scalars;
 header.n_scalars = n_scalars_old + 1;
-header.scalar_name(n_scalars_old + 1,1:size(name,2)) = name;
+header.scalar_name(n_scalars_old + 1,1:size(name,2)) = name;

along_trk_stats/trk_compile_data.m → trk_compile_data.m

@@ -44,7 +44,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Sept 2010 $Rev$ $Date$
+% Sept 2010
 
 %% Check and format input arguments
 if nargin < 6 || isempty(starting_pts_in)
@@ -158,4 +158,4 @@
 export(starting_pts_out, 'file', fullfile(outDir, 'starting_pts_out.txt'))
 
 close all
-fclose all;
+fclose all;

along_trk_stats/trk_flip.m → trk_flip.m

@@ -34,7 +34,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Apr 2010 $Rev$ $Date$
+% Apr 2010
 
 if nargin < 5, slices = []; end
 if nargin < 4, volume = []; end
@@ -93,4 +93,4 @@
             end
         end
     end
-end
+end

along_trk_stats/trk_interp.m → trk_interp.m

@@ -35,7 +35,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Apr 2010 $Rev$ $Date$
+% Apr 2010
 
 if nargin<3, spacing = []; end
 if nargin<2 || isempty(nPoints_new), nPoints_new = 100; end
@@ -83,4 +83,4 @@
         [~, ind] = min(dists);
         tracks_interp(iTrk).tiePoint = ind;
     end
-end
+end

along_trk_stats/trk_length.m → trk_length.m

@@ -23,7 +23,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Apr 2010 $Rev$ $Date$
+% Apr 2010
 
 % Put in matrix form if possible
 if isstruct(tracks) && length(unique(cat(tracks.nPoints)))==1
@@ -40,4 +40,4 @@
     for i=1:length(tracks)
         lengths(i) = sum(sqrt(squeeze(sum((tracks(i).matrix(2:end,1:3) - tracks(i).matrix(1:(end-1),1:3)).^2, 2))), 1);
     end
-end
+end

along_trk_stats/trk_mean_sc.m → trk_mean_sc.m

@@ -33,7 +33,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Apr 2010 $Rev$ $Date$
+% Apr 2010
 
 scalars = zeros(tracks(1).nPoints, header.n_count, header.n_scalars);
 
@@ -43,4 +43,4 @@
 end
 
 scalar_mean = squeeze(nanmean(scalars, 2));
-scalar_sd   = squeeze(nanstd(scalars, 0, 2));
+scalar_sd   = squeeze(nanstd(scalars, 0, 2));

along_trk_stats/trk_plot.m → trk_plot.m

@@ -24,7 +24,7 @@ function trk_plot(header,tracks,volume,slices)
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Mar 2010 $Rev$ $Date$
+% Mar 2010
 
 % Input argument defaults
 if nargin < 4, slices = []; end

along_trk_stats/trk_read.m → trk_read.m

@@ -21,7 +21,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Mar 2010 $Rev$ $Date$
+% Mar 2010
 
 % Parse in header
 fid    = fopen(filePath, 'r');
@@ -80,4 +80,4 @@
 header.swap_zx                   = fread(fid, 1, 'uchar');
 header.n_count                   = fread(fid, 1, 'int')';
 header.version                   = fread(fid, 1, 'int')';
-header.hdr_size                  = fread(fid, 1, 'int')';
+header.hdr_size                  = fread(fid, 1, 'int')';

along_trk_stats/trk_restruc.m → trk_restruc.m

@@ -25,7 +25,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Mar 2010 $Rev$ $Date$
+% Mar 2010
 
 if nargin < 2, tiePoint = []; end
 
@@ -69,4 +69,4 @@
     if tiePoint
         [tracks_out.tiePoint] = deal(tiePoint);
     end
-end
+end

along_trk_stats/trk_stats.m → trk_stats.m

@@ -36,7 +36,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Mar 2010 $Rev$ $Date$
+% Mar 2010
 
 % Input argument defaults
 if nargin < 4 || isempty(method), method = 'quick'; end
@@ -64,4 +64,4 @@
     meanInt = nanmean(ints(ints>0));
     stdInt  = nanstd(ints(ints>0));
     nVox    = length(unique(ceil(vert ./ repmat(header.voxel_size, size(vert,1),1)), 'rows'));
-end
+end

along_trk_stats/trk_stats_overlay.m → trk_stats_overlay.m

@@ -29,7 +29,7 @@ function trk_stats_overlay(exptDir,subDir,tract_info,corrected)
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Sept 2010 $Rev$ $Date$
+% Sept 2010
 
 %% Load files and setup
 % Load the statistical results dataset from R
@@ -91,4 +91,4 @@ function trk_stats_overlay(exptDir,subDir,tract_info,corrected)
 
 % Save the results for final visualization in TrackVis
 savePath = fullfile(exptDir, 'results.trk');
-trk_write(header_mean_sc, track_mean_sc_str, savePath)
+trk_write(header_mean_sc, track_mean_sc_str, savePath)

along_trk_stats/trk_stats_quick.m → trk_stats_quick.m

@@ -36,7 +36,7 @@
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Mar 2010 $Rev$ $Date$
+% Mar 2010
 
 % Input argument defaults
 if nargin < 4 || isempty(method), method = 'quick'; end
@@ -58,4 +58,4 @@
 % Calculate descriptive statistics
 meanInt = mean(ints(ints>0));
 stdInt  = std(ints(ints>0));
-nVox    = length(unique(vert_vox_rnd, 'rows'));
+nVox    = length(unique(vert_vox_rnd, 'rows'));

along_trk_stats/trk_write.m → trk_write.m

@@ -22,7 +22,7 @@ function trk_write(header,tracks,savePath)
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Apr 2010 $Rev$ $Date$
+% Apr 2010
 
 fid = fopen(savePath, 'w');
 
@@ -66,4 +66,4 @@ function trk_write(header,tracks,savePath)
     end
 end
 
-fclose(fid);
+fclose(fid);

along_trk_stats/trk_write_ascii.m → trk_write_ascii.m

@@ -30,7 +30,7 @@ function trk_write_ascii(tracks,filePath)
 
 % Author: John Colby ([email protected])
 % UCLA Developmental Cognitive Neuroimaging Group (Sowell Lab)
-% Oct 2010 $Rev$ $Date$
+% Oct 2010
 
 if nargin < 2 || isempty(filePath); filePath = fullfile(pwd, 'tracks.txt'); end
 if nargin < 1 || isempty(tracks); error('Must supply tracks to write.'); end
@@ -45,4 +45,4 @@ function trk_write_ascii(tracks,filePath)
 fprintf(fid, 'Streamline\tPoint\tx\ty\tz\tFA\n');
 fprintf(fid, '%i\t%i\t%f\t%f\t%f\t%0.4f\n', permute(outmat,[2 1 3]));
 
-fclose(fid);
+fclose(fid);