Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Project 3 #71

Open
wants to merge 5 commits into
base: main
Choose a base branch
from
Open

Project 3 #71

wants to merge 5 commits into from

Conversation

giacomodecolle
Copy link
Collaborator

Hello John,

this is a pull request for Project 3.
I have closed the pull request for Project 2 since you already commented on it and I couldn't open a new one without closing the old one apparently.
Let me know if everything works!

@giacomodecolle giacomodecolle requested a review from johnbeve March 12, 2023 22:32
Copy link
Owner

@johnbeve johnbeve left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Excellent

(b) Transitive

The object property, “existence ends with”, should have the transitive characteristic listed.
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Very good. We should discuss these and consider having you post on the RO issue tracker: https://github.com/oborel/obo-relations

(b) Transitive

The object property, “aligned with”, should not have the transitive property listed. Finn:
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is a very good find.

Tuesday instance_of one-dimensional temporal region
Wednesday instance of one-dimensional temporal region
Arm instance_of fiat object part
“Sally participates in having at least one arm on Tuesday” instance of occurrent
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

What exactly is an instance of occurrent here? A proposition?

Liver is a class in Uberon (UBERON_0002107), which is a subclass of material entity.
https://ontobee.org/ontology/UBERON?iri=http://purl.obolibrary.org/obo/UBERON_0002107

Argument ex auctoritate from BS for the object property has_part_at_all_times:
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Not good enough, try again.

Marriage instance_of occurent
“Three years span 1” instance_of one-dimensional temporal region.
Notice that the original phrase doesn’t say anything about Goofus and Gallant being
married to each other, and we won’t represent such a fact.
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Yes you will

C (x, t) = being a child at t
A (x, t) = being an adult at t
S (x, t) = being a senior at t
∃t1∃t2∃t3 (C (j, t1) ∧ A (J, t2) ∧ S(J, t3) ∧ E (t1, t2) ∧ E (t1, t3))
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Your relation 'being earlier than' is underspecified. As it stands, the relation permits models in which E(t3, t1) holds as well.

(d) Goofus and Gallant have been married for three years; for each day of that span,
it is true to assert they are married.

Again, notice we are not modeling that Goofus and Gallant are married to each other.
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Model that



6. Using Protege, place these in the BFO hierarchy where you think they fit best:
```
Some of these questions are of course ambigous. In a real-life situation, we would talk with
the domain experts/ client who asked us to build the ontology and understand what of the
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Exactly

(c) SARS-CoV-2
Role
(c) SARS-COV-2
Object (apparently we use this term to refer to the virus, not the disease/ disorder)
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Right, the disease is COVID-19

(d) An organization may have no members as part.
If organizations are object aggregates, this is false.
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The current specification allows that organizations may have no members at some point, but they must've had members when created.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants