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Commits on Nov 8, 2019

• fixed input data issues

  jminnier

  committed
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• updated input functions. working for examples.

  jminnier

  committed
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Commits on Aug 8, 2019

• working on updating input data functions. not working yet.

  jminnier

  committed
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Commits on Oct 21, 2018

• radio buttons were not updating correctly, avoided errors by changing test statements, but it's still strange that the updateradiobutton doesn't update the options and selected expression name and …

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  jminnier

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Commits on Sep 14, 2018

• fix plotly issue with analysis plots

  jminnier

  committed
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• fix bioconductor

  jminnier

  committed
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Commits on Aug 15, 2018

• Merge branch 'devel'

  jminnier

  committed
  2471cc0

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• dcf testing

  jminnier

  committed
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• update edgeR

  jminnier

  committed
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Commits on Apr 19, 2018

• filter: add message showing # genes pass filter

  jminnier

  committed
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• filter tab: add filter by expression level (min/max), add download button

  jminnier

  committed
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• filter functions were broken. fixed to run.

  jminnier

  committed
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Commits on Feb 1, 2018

• Update index.md

  jminnier

  authored
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• Set theme jekyll-theme-dinky and migrate Page Generator content

  jminnier

  committed
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Commits on Jan 23, 2018

• fix plotly hover text

  jminnier

  committed
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Commits on May 14, 2017

• Merge pull request #4 from aymanm/ggplotFix

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  jminnier

  authored
  2bcb700

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• fix fun-analysisres.R for new version of ggplot

  aymanm

  committed
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Commits on Mar 13, 2017

• update filter

  jminnier

  committed
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Commits on Nov 22, 2016

• wrong shiny branch mixed up readme

  jminnier

  committed
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Commits on Nov 15, 2016

• rename ui-tab-filterdata

  jminnier

  committed
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• server side selectizeInput does not work with data frames apparently, fixed by turning into an unlisted long character vector (did this for main app anyway, it is less pretty but much faster)

  jminnier

  committed
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• server selectizeinput for gene ids

  jminnier

  committed
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Commits on Nov 4, 2016

• don't need DT:: anymore

  jminnier

  committed
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• added filters for filter data. runs but does not filter yet.

  jminnier

  committed
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• update gitignores with .DS_Store (?)

  jminnier

  committed
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Commits on Nov 3, 2016

• removed expr_data from all code -- it is not needed now that PCA and pheatmap use data_long

  jminnier

  committed
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• group plots PCA and pheatmap - added option to select value to plot

  jminnier

  committed
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Commits on Nov 2, 2016

• fix readme

  jminnier

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Commits on Oct 27, 2016

• scatterplot: instead of rounding p-values, use signif()

  jminnier

  committed
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• scatterplots: allow color selection of scatterplot high/low. fix bug that searches gene names for highlighting too generally (grep), now exact matches only. allow coloring by p-value and q-value tr…

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  jminnier

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Commits on Oct 22, 2016

• scatterplot/volcano - when selecting genes need to use fixed grep since sometimes * are in proteomics symbols

  jminnier

  committed
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• scatterplot and volcanoplot: select genes to highlight; need to improve speed/performance.

  jminnier

  committed
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• scatterplot: mutate is slow, change to computation

  jminnier

  committed
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• add news updates

  jminnier

  committed
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• scatterplot: color by p-value, logFC, adj p-value etc. also fix color of scatterplot to be consistent.

  jminnier

  committed
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