updated input functions. working for examples.

jminnier · Nov 8, 2019 · ce1e244 · ce1e244
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commit ce1e244
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Showing 17 changed files with 55,507 additions and 18,315 deletions.
diff --git a/data/exampleanalysisres_short.csv b/data/exampleanalysisres_short.csv
diff --git a/data/examplecounts_short.csv b/data/examplecounts_short.csv
@@ -37,15 +37,15 @@
 "ENSMUSG00000083014","Gm11764",852,982,1030,1218,1194,1225,1082,1052,1155
 "ENSMUSG00000022546","Gpt",374,506,646,421,394,518,636,461,486
 "ENSMUSG00000046295","Ankle1",201,104,122,173,225,215,124,131,80
-"ENSMUSG00000092119","",9,9,4,10,6,9,3,7,5
+"ENSMUSG00000092119",NA,9,9,4,10,6,9,3,7,5
 "ENSMUSG00000020705","Ddx42",74,37,63,19,29,34,19,18,15
 "ENSMUSG00000028882","Ppp1r8",18,15,23,36,17,28,20,7,22
-"ENSMUSG00000079100","",75,40,71,54,62,67,90,106,91
+"ENSMUSG00000079100",NA,75,40,71,54,62,67,90,106,91
 "ENSMUSG00000065282","Gm24455",13790,13595,14353,7288,9839,8055,6764,7222,6812
 "ENSMUSG00000073771","Btbd19",41,57,61,29,40,33,41,38,51
 "ENSMUSG00000043621","Ubxn10",2657,1104,1395,3861,3428,3812,986,1063,998
 "ENSMUSG00000036585","Fgf1",281,158,238,263,208,226,210,144,213
-"ENSMUSG00000065855","",1802,1660,1880,1404,1575,1437,1098,1060,1059
+"ENSMUSG00000065855",NA,1802,1660,1880,1404,1575,1437,1098,1060,1059
 "ENSMUSG00000082072","Gm15785",718,589,708,651,712,712,595,511,566
 "ENSMUSG00000024168","Tmem204",390,261,235,465,418,418,334,385,318
 "ENSMUSG00000028049","Scamp3",10533,7431,8550,11599,11485,12192,9710,9763,8447
@@ -72,7 +72,7 @@
 "ENSMUSG00000031984","2810004N23Rik",2410,2292,2638,2317,2453,2473,2457,2425,2534
 "ENSMUSG00000028772","Zcchc17",588,541,665,711,743,702,564,540,607
 "ENSMUSG00000041153","Osgin2",3448,3557,3520,4698,4632,4689,4475,4726,4452
-"ENSMUSG00000090384","",192,192,277,108,118,138,176,152,183
+"ENSMUSG00000090384",NA,192,192,277,108,118,138,176,152,183
 "ENSMUSG00000049538","Adamts16",7477,8184,8690,4090,5305,4673,4429,4711,5107
 "ENSMUSG00000045659","Plekha7",1015,957,992,666,734,780,668,688,603
 "ENSMUSG00000078235","Fam43b",11,11,11,8,6,9,3,9,10
@@ -93,7 +93,7 @@
 "ENSMUSG00000024222","Fkbp5",186,154,163,197,141,319,179,111,101
 "ENSMUSG00000029798","Herc6",15,19,18,10,14,12,27,14,16
 "ENSMUSG00000033751","Gadd45gip1",19,13,21,72,63,24,33,47,38
-"ENSMUSG00000084975","",89,76,122,72,102,95,114,73,112
+"ENSMUSG00000084975",NA,89,76,122,72,102,95,114,73,112
 "ENSMUSG00000031157","Pqbp1",2810,2827,2975,2777,2747,2496,3208,3218,3040
 "ENSMUSG00000038028","9630033F20Rik",3539,3513,3834,4329,4204,4323,3708,3601,3309
 "ENSMUSG00000020520","Galnt10",1,0,1,5,2,3,1,5,1

diff --git a/data/mousecounts_example.RData b/data/mousecounts_example.RData
diff --git a/data/mousecounts_example_analysis_results.RData b/data/mousecounts_example_analysis_results.RData
diff --git a/data/mousecounts_example_analysis_results_old.RData b/data/mousecounts_example_analysis_results_old.RData
diff --git a/data/mousecounts_example_analyzed.csv b/data/mousecounts_example_analyzed.csv