Skip to content

0.6.0
Compare
Choose a tag to compare
@jmenglund jmenglund released this 05 May 20:54
· 16 commits to master since this release
v0.6.0
004b8dd
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. Datasets can be simulated under the GTR+G+I substitution model or any nested variant available in MrBayes (JC69, HKY85 etc.). The code is contained within a single module that can also be imported using Python's import mechanism. It uses Seq-Gen for simulating the DNA-sequences and builds on the third-party library DendroPy.

The code has been tested with Python 3.3 and 3.6.

Source repository: https://github.com/jmenglund/predsim

This is a minor release with the following changes to the command-line interface: the options -f and --format is now used to specify the output format. The new option --trees-file make it possible to store just the trees used in the simulations.

Assets 2
Loading