Mob 24 b: changes to aid running of groovy from java

api/src/main/java/org/openmrs/module/amrsmobileforms/DeleteSpacesInPatiendIdTask.java

@@ -0,0 +1,58 @@
+package org.openmrs.module.amrsmobileforms;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.openmrs.api.APIException;
+import org.openmrs.api.context.Context;
+import org.openmrs.module.amrsmobileforms.groovy.CleanPatientIdentifiers;
+import org.openmrs.module.amrsmobileforms.util.MobileFormEntryUtil;
+import org.openmrs.scheduler.tasks.AbstractTask;
+
+/**
+ * A task to clean up patient identifier prior to processing.
+ * 
+ *
+ */
+public class DeleteSpacesInPatiendIdTask extends AbstractTask {
+
+	private static Log log = LogFactory.getLog(DeleteSpacesInPatiendIdTask.class);
+    String filePath = MobileFormEntryUtil.getMobileFormsDropDir().getAbsolutePath();
+    private CleanPatientIdentifiers cleanPatientIdentifiers;
+
+    public CleanPatientIdentifiers getCleanPatientIdentifiers() {
+        return cleanPatientIdentifiers;
+    }
+
+    public void setCleanPatientIdentifiers(CleanPatientIdentifiers cleanPatientIdentifiers) {
+        this.cleanPatientIdentifiers = cleanPatientIdentifiers;
+    }
+
+    /**
+	 * Call Groovy class that cleans patient identifiers
+	 */
+	public void execute() {
+		Context.openSession();
+		log.debug("Running task that cleans Patient Identifier prior to form processing ");
+		try {
+			if (Context.isAuthenticated() == false)
+				authenticate();
+            //It would be good if we pass the full URL to path of the directory with forms to be processed
+            cleanPatientIdentifiers.getDirFileListing(filePath);
+		} catch (APIException e) {
+			log.error("Error running mobile forms relationships task", e);
+			throw e;
+		} finally {
+			Context.closeSession();
+		}
+	}
+
+	/*
+	 * Resources clean up
+	 */
+	public void shutdown() {
+		super.shutdown();
+		log.debug("Shutting down task that cleans Patient Identifier");
+	}
+
+
+}

api/src/main/java/org/openmrs/module/amrsmobileforms/groovy/CleanPatientIdentifiers.java

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+package org.openmrs.module.amrsmobileforms.groovy;
+
+/**
+ * TODO:please provide a brief description for the class.
+ */
+public interface CleanPatientIdentifiers {
+}

api/src/main/java/org/openmrs/module/amrsmobileforms/groovy/ParseXML.groovy

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+package org.openmrs.module.amrsmobileforms.groovy
+
+import groovy.xml.StreamingMarkupBuilder
+
+public class ParseXML{
+
+    def getDirFileListing(String pathToFolder){
+
+        new File(pathToFolder).eachFile() { file->
+
+            def fullFilePath = pathToFolder +"/" + file.getName()
+            def fileData = new XmlSlurper(false,false).parse(fullFilePath);
+
+            if(fileData==null){
+                //todo: handle blank files
+            }
+            else{
+
+
+                def individuals = fileData.household.individuals.individual
+
+                individuals.each{
+                    String patient_number = it.patient."patient.medical_record_number"
+                    patient_number = patient_number.toString()
+
+                    if(patient_number){
+
+                        patient_number.trim()
+
+                        String newNum =patient_number.replaceAll("\\s","")
+
+                        if(!patient_number.equals(newNum)){
+
+                            it.patient."patient.medical_record_number".replaceBody(newNum)
+
+                            def writable = new StreamingMarkupBuilder().bind { mkp.yield fileData }
+                            writable.writeTo(new PrintWriter(new FileWriter(fullFilePath)))
+
+
+                        }
+
+
+                    }
+                    else{
+
+                        //todo:add code to perfom any  task for such a scenario
+
+                    }
+
+                }
+
+
+            }
+
+
+        }
+
+
+
+    }
+
+
+}
+
+