Py310 #16
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| name: SEPP_github_tests | ||
| on: | ||
| push: | ||
| branches: [ master ] | ||
| pull_request: | ||
| branches: [ master ] | ||
| jobs: | ||
| python_tests: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| pyversion: [3.9, 3.10] | ||
| steps: | ||
| - name: Checkout Repo | ||
| uses: actions/checkout@v3 | ||
| - name: setup conda | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| # This uses *miniforge*, rather than *minicond*. The primary difference | ||
| # is that the defaults channel is not enabled at all | ||
| miniforge-version: latest | ||
| # These properties enable the use of mamba, which is much faster and far | ||
| # less error prone than conda while being completely compatible with the | ||
| # conda CLI | ||
| use-mamba: true | ||
| mamba-version: "*" | ||
| python-version: "${{ py_version }}" | ||
|
Check failure on line 29 in .github/workflows/sepp_tests.yml
|
||
| environment-file: ci/environment.yml | ||
| auto-activate-base: true | ||
| activate-environment: sepp_ci | ||
| - name: install sepp | ||
| shell: bash -el {0} | ||
| run: | | ||
| python setup.py config -c | ||
| python setup.py install | ||
| - name: run tests | ||
| shell: bash -el {0} | ||
| run: | | ||
| conda list | ||
| nosetests -w test/unittest --with-doctest --with-coverage | ||
| - name: convert coverage | ||
| shell: bash -el {0} | ||
| run: | | ||
| coverage lcov | ||
| - name: send coverage report. | ||
| uses: coverallsapp/github-action@master | ||
| with: | ||
| github-token: ${{ secrets.GITHUB_TOKEN }} | ||
| path-to-lcov: "coverage.lcov" | ||
| linting: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| pyversion: [3.9, 3.10] | ||
| steps: | ||
| - name: Checkout Repo | ||
| uses: actions/checkout@v3 | ||
| - name: setup conda | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| # This uses *miniforge*, rather than *minicond*. The primary difference | ||
| # is that the defaults channel is not enabled at all | ||
| miniforge-version: latest | ||
| # These properties enable the use of mamba, which is much faster and far | ||
| # less error prone than conda while being completely compatible with the | ||
| # conda CLI | ||
| use-mamba: true | ||
| mamba-version: "*" | ||
| python-version: "${{ py_version }}" | ||
| environment-file: ci/env_lint.yml | ||
| auto-activate-base: true | ||
| activate-environment: sepp_lint | ||
| - name: linting | ||
| shell: bash -el {0} | ||
| run: | | ||
| flake8 setup.py split_sequences.py distribute_setup.py run_ensemble.py run_sepp.py run_upp.py merge_script.py test/unittest/ sepp/ | ||
