Merge pull request #15 from jlab/split-tests

Split tests

.github/workflows/github_tests.yml

@@ -42,11 +42,8 @@ jobs:
 #      with:
 #        github-token: ${{ secrets.GITHUB_TOKEN }}
 #        path-to-lcov: "coverage.lcov"
-  tests-functional:
+  simulate-data:
     runs-on: ubuntu-latest
-    defaults:
-      run:
-        shell: bash -l {0}
 
     steps:
     - name: Checkout Repo
@@ -66,10 +63,33 @@ jobs:
     - name: Simulate reads
       run: |
         marbel --n-species 10 --n-orthogroups 200 --n-samples 5 10 --outdir run_spec10_orth200_samp5-10/
+    - name: Archive simulation results
+      uses: actions/upload-artifact@v4
+      with:
+        name: simulated data
+        path: run_spec10_orth200_samp5-10
+
+
+  tests-functional:
+    needs: simulate-data
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+    - name: Checkout Repo
+      uses: actions/checkout@v2
+      with:
+          lfs: true
     - name: Create conda test-env
       run: |
         conda create -n marbel-tests scikit-bio
-
+    - name: Download simulated data
+      uses: actions/download-artifact@v4
+      with:
+        name: simulated data
+        path: run_spec10_orth200_samp5-10/
     - name: Execute functional tests
       run: |
         conda init