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Merged tool #29

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Merged tool #29

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d38ae75
add subsampling
Aug 5, 2024
4684232
add subsampling
Aug 5, 2024
d3e1caf
add subsampling
Landbarsch Aug 5, 2024
c3266ff
"add subsampling"
Landbarsch Aug 5, 2024
68876c5
add subsampling
Landbarsch Aug 5, 2024
8d8438e
update
Landbarsch Aug 19, 2024
7f08f11
updated sample size, now working
Landbarsch Sep 12, 2024
5611569
added comments to the skript, removed the debugg-
Landbarsch Sep 27, 2024
b851734
Merged Multiprocessing Apsect with Subsampling
Landbarsch Nov 21, 2024
765987b
Added Docstring to the missing Methods. Added
Landbarsch Nov 26, 2024
7f0908c
Formatting
Landbarsch Nov 28, 2024
dd79888
more formatting
Landbarsch Nov 28, 2024
3cf6e0f
formatted for flake8
Landbarsch Nov 28, 2024
3849a7d
Delete .DS_Store
Landbarsch Dec 12, 2024
41f3d6a
Update .gitignore
Landbarsch Dec 12, 2024
ceaa08e
Delete vxdetector/testlog
Landbarsch Dec 12, 2024
844c824
Update environment.yml
Landbarsch Dec 12, 2024
8867fa8
Update environment.yml
Landbarsch Dec 12, 2024
2b2a01a
Update environment.yml
Landbarsch Dec 12, 2024
37f8601
Update environment.yml
Landbarsch Jan 18, 2025
85b5d96
Update environment.yml
Landbarsch Jan 18, 2025
9f15b02
Update VXdetector.py
Landbarsch Jan 18, 2025
015bbf5
Update test_VXdetector.py
Landbarsch Jan 18, 2025
528ab57
Update test_VXdetector.py
Landbarsch Jan 18, 2025
95ac674
Merge branch 'master' of github.com:jlab/algorithm_vxdetector into Me…
Landbarsch Jan 31, 2025
b79162a
Merge branch 'Merged_Tool' of github.com:jlab/algorithm_vxdetector in…
Landbarsch Jan 31, 2025
d2833b7
cleanuo
Landbarsch Jan 31, 2025
7d60e26
TestChanges
Landbarsch Jan 31, 2025
10398e9
added biom to env
Landbarsch Jan 31, 2025
4ab20f7
-format
Landbarsch Jan 31, 2025
0edb289
Changed test to include new params
Landbarsch Feb 3, 2025
bf931b6
Formatiing for Lint
Landbarsch Feb 3, 2025
b910cef
Changed the interact_bowtie2 Script
Landbarsch Feb 3, 2025
99018bc
formatting of interact_bowtie2
Landbarsch Feb 4, 2025
cc4fadc
fixes for testing
Landbarsch Feb 4, 2025
b2743c3
reduced sample size for the test
Landbarsch Feb 4, 2025
545c8c2
changed a parameter
Landbarsch Feb 4, 2025
e2d5f2b
Changes to test_interact_bowtie
Landbarsch Feb 4, 2025
7f6cfc8
undo changes
Landbarsch Feb 4, 2025
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
.coverage
coverage.lcov
bowtie2.*.bt2
.DS_Store
3 changes: 2 additions & 1 deletion environment.yml
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Expand Up @@ -12,4 +12,5 @@ dependencies:
- coverage >= 6 # to ensure lcov option is available
- pip # Add pip to handle packages not available in conda
- pip:
- pynose # Install pynose via pip, if available
- pynose # Install pynose via pip, if available
- biom-format
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