Create student guide

student-guide/99-student_guide.md

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+
+# Student Guide
+
+## Activity One
+
+You might want to create a student guide that contains a different subset of Rmd files from your book, or renders to a different output format (e.g. word document). You can specify the output and Rmd files that will be used for the student guide using the `_output.yml` and `_bookdown.yml` files in the student-guide directory.
+
+## Activity Two
+
+Steps of the guide could go here.

student-guide/index.md

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+---
+title: "Getting Started on AnVIL"
+date: "January 17, 2025"
+site: bookdown::bookdown_site
+documentclass: book
+bibliography: [book.bib, packages.bib]
+biblio-style: apalike
+link-citations: yes
+description: "Guides to help new AnVIL users set up their accounts and start doing research on the AnVIL platform"
+favicon: assets/AnVIL_style/anvil_favicon.ico
+---
+
+
+
+# About this Book {-}
+
+This book is part of a series of books for the Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL) of the National Human Genome Research Institute (NHGRI). Here, we present opinionated step-by-step guides for setting up accounts focused on three personas: PIs, Analysts, and Consortia.
+
+![](index_files/figure-docx//1kGxHkP0JVPNF1kla5XEqaIt1yz9s4ZbgzJ2zfL7GmTE_gf8e59f4b48_0_0.png){width=80%}
+
+### Skills Level {-} 
+
+Please choose the closest matching persona from the lefthand menu.
+
+::: {.notice}
+_Genetics_  
+
+**Novice**: no genetics knowledge needed
+
+_Programming skills_  
+
+**Novice**: no programming experience needed
+:::
+
+### AnVIL Collection {-}
+
+Additional guides are provided to help you with Workspaces, launch interactive tools, and start working with data. Learn more about AnVIL by visiting https://anvilproject.org or reading the [article in Cell Genomics](https://www.sciencedirect.com/science/article/pii/S2666979X21001063).
+
+Please check out our full collection of AnVIL and related resources: https://hutchdatascience.org/AnVIL_Collection/
+

student-guide/reference-keys.txt

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+student-guide
+activity-one
+activity-two