Merge pull request #167 from jbohnslav/jbohnslav/202408_fix

Code Quality Improvements and Development Infrastructure Updates

.dockerignore

@@ -13,4 +13,4 @@ docker-compose.yml
 build/*
 dist/*
 docs/*
-docker/
+docker/

.github/workflows/gpu.yml

@@ -0,0 +1,51 @@
+# Temporarily disabled - requires GitHub Teams plan for GPU runners
+# name: GPU Tests
+#
+# on:
+#   push:
+#     branches: [ master ]
+#   pull_request:
+#     branches: [ master ]
+#
+# jobs:
+#   gpu-test:
+#     runs-on: ubuntu-20.04
+#
+#     steps:
+#     - uses: actions/checkout@v3
+#
+#     - name: Set up Python 3.7
+#       uses: actions/setup-python@v4
+#       with:
+#         python-version: '3.7'
+#
+#     - name: Install FFMPEG
+#       run: |
+#         sudo apt-get update
+#         sudo apt-get install -y ffmpeg
+#
+#     - name: Install PySide2
+#       run: |
+#         python -m pip install --upgrade pip
+#         pip install "pyside2==5.13.2"
+#
+#     - name: Install PyTorch with CUDA
+#       run: |
+#         pip install torch==1.11.0+cu115 torchvision==0.12.0+cu115 -f https://download.pytorch.org/whl/torch_stable.html
+#
+#     - name: Install package and test dependencies
+#       run: |
+#         python -m pip install --upgrade "pip<24.0"
+#         pip install -r requirements.txt
+#         pip install pytest pytest-cov
+#         python setup.py develop
+#
+#     - name: Setup test data
+#       run: |
+#         python setup_tests.py
+#
+#     - name: GPU Tests
+#       run: |
+#         pytest -v -m "gpu" tests/
+#       env:
+#         CUDA_VISIBLE_DEVICES: 0

.github/workflows/main.yml

@@ -0,0 +1,64 @@
+name: CPU Tests
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  test:
+    name: Test on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-20.04, windows-latest, macos-13]
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up Python 3.7
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.7'
+
+    - name: Install FFMPEG (Ubuntu)
+      if: matrix.os == 'ubuntu-20.04'
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y ffmpeg
+
+    - name: Install FFMPEG (Windows)
+      if: matrix.os == 'windows-latest'
+      run: |
+        choco install ffmpeg
+
+    - name: Install FFMPEG (macOS)
+      if: matrix.os == 'macos-13'
+      run: |
+        brew install ffmpeg
+
+    - name: Install PySide2
+      run: |
+        python -m pip install --upgrade pip
+        pip install "pyside2==5.13.2"
+
+    - name: Install PyTorch CPU
+      run: |
+        pip install torch torchvision --index-url https://download.pytorch.org/whl/cpu
+
+    - name: Install package and test dependencies
+      run: |
+        python -m pip install --upgrade "pip<24.0"
+        pip install -r requirements.txt
+        pip install pytest pytest-cov
+        python setup.py develop
+
+    - name: Setup test data
+      run: |
+        python setup_tests.py
+
+    - name: Run CPU tests
+      run: |
+        pytest -v -m "not gpu" tests/

.github/workflows/pre-commit.yml

@@ -0,0 +1,28 @@
+name: Pre-commit
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-20.04
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up Python 3.7
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.7'
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install pre-commit ruff
+
+    - name: Run pre-commit
+      run: |
+        pre-commit install
+        pre-commit run --all-files

.github/workflows/release.yml

@@ -0,0 +1,100 @@
+name: Publish Python 🐍 distribution 📦 to PyPI
+
+on:
+  push:
+    # Only run this workflow when a tag with the pattern 'v*' is pushed
+    tags:
+      - 'v*'
+
+jobs:
+  # Step 1: Build the Python package
+  build:
+    name: Build distribution 📦
+    runs-on: ubuntu-20.04
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.7'
+
+      - name: Install build dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install build pytest
+          pip install -e .
+
+      - name: Run tests
+        run: pytest tests/
+
+      - name: Build package
+        run: python -m build
+
+      - name: Store the distribution packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+
+  # Step 2: Publish the distribution to PyPI
+  publish-to-pypi:
+    name: Publish to PyPI
+    needs: build
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Download distribution packages
+        uses: actions/download-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+
+      - name: Publish to PyPI
+        uses: pypa/[email protected]
+        with:
+          # If using a secret-based token:
+          username: '__token__'
+          password: ${{ secrets.PYPI_API_TOKEN }}
+
+  # Step 3: Sign the distribution and create a GitHub release
+  github-release:
+    name: Sign the distribution 📦 with Sigstore and upload to GitHub Release
+    needs: publish-to-pypi
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write  # Required to create GitHub Releases
+      id-token: write  # Required for sigstore
+
+    steps:
+      - name: Download distribution packages
+        uses: actions/download-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+
+      - name: Sign the dists with Sigstore
+        uses: sigstore/[email protected]
+        with:
+          inputs: >-
+            ./dist/*.tar.gz
+            ./dist/*.whl
+
+      - name: Create GitHub Release
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        run: |
+          # $GITHUB_REF_NAME is the tag name, e.g. 'v1.0.0'
+          gh release create "$GITHUB_REF_NAME" \
+            --repo "$GITHUB_REPOSITORY" \
+            --title "Release $GITHUB_REF_NAME" \
+            --notes "See CHANGELOG for details."
+
+      - name: Upload artifact signatures to GitHub Release
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        run: |
+          gh release upload "$GITHUB_REF_NAME" dist/** \
+            --repo "$GITHUB_REPOSITORY"

.gitignore

@@ -152,4 +152,4 @@ venv.bak/
 dmypy.json
 
 # Pyre type checker
-.pyre/
+.pyre/

.pre-commit-config.yaml

@@ -0,0 +1,19 @@
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v3.4.0
+    hooks:
+    -   id: trailing-whitespace
+    -   id: end-of-file-fixer
+    -   id: check-yaml
+    -   id: check-added-large-files
+    -   id: check-ast
+    -   id: check-json
+    -   id: check-merge-conflict
+    -   id: detect-private-key
+
+-   repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.9.1
+    hooks:
+    -   id: ruff
+        args: [--fix]
+    -   id: ruff-format

CODEOWNERS

@@ -0,0 +1 @@
+@jbohnslav

MANIFEST.in

@@ -1,3 +1,3 @@
 include README.md
 include deepethogram/gui/icons/*.png
-recursive-include deepethogram/conf *
+recursive-include deepethogram/conf *