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Get lineage phenotypes#1

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plsteinberg wants to merge 8 commits intomainjbloomlab/SARS2-spike-predictor-phenos:mainfrom Get-Lineage-Phenotypesjbloomlab/SARS2-spike-predictor-phenos:Get-Lineage-PhenotypesCopy head branch name to clipboard

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Commits on Sep 20, 2024

• Modify SARS2-spike-predictor-phenos, rename clade to lineage

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  f732519

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• Modify config.yaml for lineage_phenotypes.ipnyb

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• Intermediate pivot df by region

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• Results from lineage_phenotypes.ipnyb

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Commits on Sep 23, 2024

• Include NTD in phenotypes

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Commits on Oct 1, 2024

• Split RBD and Non-RBD

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Commits on Oct 7, 2024

• Add ORF1a, accessory, mut counts

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• Change domain range

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