Functions used in downstream sortChIC analysis, and stand-alone example scripts to run latent Dirichlet allocation, infer TF activites, and process bam files.
devtools::install_github("jakeyeung/scchic-functions")
scchic-functions/R contains functions for downstream sortChIC analysis
scchic-functions/scripts/ridge_scripts contains functions to infer TF activities
scchic-functions/scripts/processing_scripts contains stand-alone bash scripts to run models such as latent Dirichlet allocation, GLMPCA, and processing bam files.