-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
14 changed files
with
311 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,12 @@ | ||
# Please see the documentation for all configuration options: | ||
# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates | ||
|
||
version: 2 | ||
updates: | ||
- package-ecosystem: "pip" | ||
directory: "/" # Location of requirements.txt | ||
schedule: | ||
interval: "weekly" | ||
day: "sunday" | ||
# Disable version updates, only allow security updates | ||
open-pull-requests-limit: 0 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,10 @@ | ||
name: Lint | ||
|
||
on: [push, pull_request] | ||
|
||
jobs: | ||
lint: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- uses: actions/checkout@v3 | ||
- uses: psf/black@stable |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,8 @@ | ||
name: Ruff | ||
on: [push, pull_request] | ||
jobs: | ||
ruff: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- uses: actions/checkout@v3 | ||
- uses: chartboost/ruff-action@v1 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,55 @@ | ||
repos: | ||
- repo: https://github.com/pre-commit/pre-commit-hooks | ||
rev: v4.4.0 | ||
hooks: | ||
- id: check-yaml | ||
- id: check-case-conflict | ||
- id: debug-statements | ||
- id: detect-private-key | ||
- id: check-added-large-files | ||
args: ["--maxkb=1000"] | ||
- id: end-of-file-fixer | ||
- id: trailing-whitespace | ||
|
||
# ruff-pre-commit should be placed after black, isort. | ||
# In case of enabling auto fix, it should be placed before other formatting tools. | ||
- repo: https://github.com/astral-sh/ruff-pre-commit | ||
# Ruff version. | ||
rev: v0.0.289 | ||
hooks: | ||
- id: ruff | ||
args: [--fix, --exit-non-zero-on-fix] | ||
|
||
- repo: https://github.com/psf/black | ||
rev: 23.7.0 | ||
hooks: | ||
- id: black | ||
args: [--target-version=py310] | ||
|
||
- repo: https://github.com/PyCQA/isort | ||
rev: 5.12.0 | ||
hooks: | ||
- id: isort | ||
|
||
- repo: https://github.com/pre-commit/mirrors-prettier | ||
rev: v3.0.0 | ||
hooks: | ||
- id: prettier | ||
types: [yaml] | ||
|
||
- repo: https://github.com/jazzband/pip-tools | ||
rev: 7.3.0 | ||
hooks: | ||
- id: pip-compile | ||
name: pip-compile requirements.in | ||
args: [requirements.in] | ||
files: ^requirements\.(in|txt)$ | ||
- id: pip-compile | ||
name: pip-compile requirements-dev.in | ||
args: [requirements-dev.in] | ||
files: ^requirements-dev\.(in|txt)$ | ||
|
||
- repo: https://github.com/RobertCraigie/pyright-python | ||
rev: v1.1.327 | ||
hooks: | ||
- id: pyright |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,33 @@ | ||
# Setting up the development environment | ||
|
||
1. Create a new virtual environment and activate it: | ||
```bash | ||
python -m venv .venv | ||
source .venv/bin/activate | ||
``` | ||
2. Install development packages (linters, etc.): | ||
```bash | ||
pip install -r requirements-dev.txt | ||
``` | ||
3. Install pre-commit hooks: | ||
```bash | ||
pre-commit install | ||
``` | ||
|
||
# Dependency management | ||
|
||
[pip-tools](https://pypi.org/project/pip-tools/) is used to keep requirements | ||
pinned properly. | ||
|
||
Define requirements as usual in the `requirements-*.in` files and | ||
`pip-compile` will generate the corresponding txt file. E.g., | ||
`pip-compile requirements-dev.in` will generate requirements-dev.txt. | ||
|
||
Both `.in` and `.txt` files will be tracked by git, and | ||
they are synced with a pre-commit hook (i.e., `pip-compile` is run | ||
automatically during each commit). | ||
|
||
To install the dependencies, use `pip-sync`, e.g., | ||
```bash | ||
pip-sync requirements-dev.txt` | ||
``` |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,8 @@ | ||
# mdai-utils | ||
|
||
Utility functions for MD.ai | ||
|
||
# Development | ||
|
||
For information about building, running, and contributing to this code base, | ||
please read the [CONTRIBUTING](CONTRIBUTING.md) page. |
Empty file.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
def main(): | ||
print("This file is here to test linters and formatters.") | ||
|
||
|
||
if __name__ == "__main__": | ||
main() |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,81 @@ | ||
[project] | ||
name = "mdai-utils" | ||
description = "Utility functions for MD.ai" | ||
requires-python = ">= 3.10" | ||
version = "0.0.1" | ||
dynamic = ["dependencies", "optional-dependencies"] | ||
|
||
authors = [ | ||
{ name = "Pablo Hernandez-Cerdan", email = "[email protected]" }, | ||
] | ||
|
||
|
||
[tool.setuptools.dynamic] | ||
dependencies = {file = ["requirements.in"]} | ||
optional-dependencies = {dev = { file = ["requirements-dev.in"] }} | ||
|
||
[build-system] | ||
requires = ["setuptools"] | ||
build-backend = "setuptools.build_meta" | ||
|
||
[tool.isort] | ||
profile = "black" | ||
|
||
[tool.ruff] | ||
# Enable the pycodestyle (`E`) and Pyflakes (`F`) rules by default. | ||
# Unlike Flake8, Ruff doesn't enable pycodestyle warnings (`W`) or | ||
# McCabe complexity (`C901`) by default. | ||
select = ["E", "F"] | ||
ignore = [] | ||
|
||
# Allow autofix for all enabled rules (when `--fix`) is provided. | ||
fixable = ["ALL"] | ||
unfixable = [] | ||
|
||
# Exclude a variety of commonly ignored directories. | ||
exclude = [ | ||
".bzr", | ||
".direnv", | ||
".eggs", | ||
".git", | ||
".git-rewrite", | ||
".hg", | ||
".mypy_cache", | ||
".nox", | ||
".pants.d", | ||
".pytype", | ||
".ruff_cache", | ||
".svn", | ||
".tox", | ||
".venv", | ||
"__pypackages__", | ||
"_build", | ||
"buck-out", | ||
"build", | ||
"dist", | ||
"node_modules", | ||
"venv", | ||
] | ||
per-file-ignores = {} | ||
|
||
# Same as Black. | ||
line-length = 88 | ||
|
||
# Allow unused variables when underscore-prefixed. | ||
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$" | ||
|
||
# Assume Python 3.10. | ||
target-version = "py310" | ||
|
||
[tool.pyright] | ||
# For pre-commit to work. See contributing.md#pre-commit | ||
venvPath = "." | ||
venv = ".venv" | ||
|
||
exclude = ["**/node_modules", | ||
"**/__pycache__", | ||
] | ||
defineConstant = { DEBUG = true } | ||
|
||
pythonVersion = "3.10" | ||
strict = true |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,8 @@ | ||
black>=23.7.0 | ||
isort>=5.12.0 | ||
pre-commit>=3.4 | ||
pip-tools>=7.3.0 | ||
build>=1.0.3 | ||
pyright>=1.1.327 | ||
ruff>=0.0.289 | ||
pytest>=7.4 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,69 @@ | ||
# | ||
# This file is autogenerated by pip-compile with Python 3.11 | ||
# by the following command: | ||
# | ||
# pip-compile requirements-dev.in | ||
# | ||
black==23.9.1 | ||
# via -r requirements-dev.in | ||
build==1.0.3 | ||
# via | ||
# -r requirements-dev.in | ||
# pip-tools | ||
cfgv==3.4.0 | ||
# via pre-commit | ||
click==8.1.7 | ||
# via | ||
# black | ||
# pip-tools | ||
distlib==0.3.7 | ||
# via virtualenv | ||
filelock==3.12.4 | ||
# via virtualenv | ||
identify==2.5.28 | ||
# via pre-commit | ||
iniconfig==2.0.0 | ||
# via pytest | ||
isort==5.12.0 | ||
# via -r requirements-dev.in | ||
mypy-extensions==1.0.0 | ||
# via black | ||
nodeenv==1.8.0 | ||
# via | ||
# pre-commit | ||
# pyright | ||
packaging==23.1 | ||
# via | ||
# black | ||
# build | ||
# pytest | ||
pathspec==0.11.2 | ||
# via black | ||
pip-tools==7.3.0 | ||
# via -r requirements-dev.in | ||
platformdirs==3.10.0 | ||
# via | ||
# black | ||
# virtualenv | ||
pluggy==1.3.0 | ||
# via pytest | ||
pre-commit==3.4.0 | ||
# via -r requirements-dev.in | ||
pyproject-hooks==1.0.0 | ||
# via build | ||
pyright==1.1.327 | ||
# via -r requirements-dev.in | ||
pytest==7.4.2 | ||
# via -r requirements-dev.in | ||
pyyaml==6.0.1 | ||
# via pre-commit | ||
ruff==0.0.289 | ||
# via -r requirements-dev.in | ||
virtualenv==20.24.5 | ||
# via pre-commit | ||
wheel==0.41.2 | ||
# via pip-tools | ||
|
||
# The following packages are considered to be unsafe in a requirements file: | ||
# pip | ||
# setuptools |
Empty file.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
# | ||
# This file is autogenerated by pip-compile with Python 3.11 | ||
# by the following command: | ||
# | ||
# pip-compile requirements.in | ||
# |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,15 @@ | ||
import pytest | ||
|
||
from mdai_utils.delme import main | ||
|
||
|
||
@pytest.fixture | ||
def setup(): | ||
print("setup") | ||
yield | ||
print("teardown") | ||
|
||
|
||
def test_delme(setup): | ||
main() | ||
assert True |