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Migration to https://w3id.org/openebench/scientific-schemas/2.0/ pref…
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…ixes for `$id` in JSON Schemas
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@jmfernandez
jmfernandez committed Oct 9, 2024
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2 changes: 1 addition & 1 deletion json-schemas/2.0.x/_shared.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/_shared",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/_shared",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "OpenEBench Benchmarking Data Model shared schema definitions",
"definitions": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/admin/privilege.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Privilege",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Privilege",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Security privileges concept (OpenEBench Benchmarking Data Model schemas)",
"type": "object",
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"title": "The JSON schema absolute URI. It must match the value of 'id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Privilege" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Privilege" ]
},
"roles" : {
"title": "The roles assigned to this contact",
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/benchmarkingEvent.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/BenchmarkingEvent",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/BenchmarkingEvent",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Benchmarking Event concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of '$id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/BenchmarkingEvent" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/BenchmarkingEvent" ]
},

"orig_id": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/challenge.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Challenge",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Challenge",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Challenge concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of '$id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Challenge" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Challenge" ]
},

"orig_id": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/community.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Community",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Community",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Community concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of '$id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Community" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Community" ]
},

"references": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/contact.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Contact",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Contact",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Contact concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of '$id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Contact" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Contact" ]
},

"links": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/dataset.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Dataset concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of '$id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Dataset" ]
},

"orig_id": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/idsolv.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/idSolv",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/idSolv",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Simple Namespace resolver for CURIE ids (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of 'id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/idSolv" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/idSolv" ]
},

"name": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/metrics.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Metrics",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Metrics",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Metrics concept (OpenEBench Benchmarking Data Model schemas)",
"description": "Abstract definition of any operation (implemented by a Tool) applied to a dataset",
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"title": "The JSON schema absolute URI. It must match the value of 'id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Metrics" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Metrics" ]
},

"orig_id": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/reference.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Reference",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Reference",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Bibliographic reference concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of 'id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Reference" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Reference" ]
},
"dependable_community_ids": {
"title": "Dependable community ids",
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2 changes: 1 addition & 1 deletion json-schemas/2.0.x/schema.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "OpenEBench Benchmarking Data Model schemas",
"type": "array",
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/testAction.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/TestAction",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/TestAction",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Test Action concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of 'id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/TestAction" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/TestAction" ]
},

"orig_id": {
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4 changes: 2 additions & 2 deletions json-schemas/2.0.x/tool.json
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{
"$id": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Tool",
"$id": "https://w3id.org/openebench/scientific-schemas/2.0/Tool",
"$schema": "https://json-schema.org/draft/2019-09/schema",
"title": "Tool concept (OpenEBench Benchmarking Data Model schemas)",
"$comment": "allOf and placeholders inspired by https://stackoverflow.com/a/24365393",
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"title": "The JSON schema absolute URI. It must match the value of 'id' in the JSON schema",
"type": "string",
"format": "uri",
"enum": [ "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Tool" ]
"enum": [ "https://w3id.org/openebench/scientific-schemas/2.0/Tool" ]
},

"orig_id": {
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/BenchmarkingEvent.json
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{
"_id": "CAMEO:2017-01-14",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/BenchmarkingEvent",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/BenchmarkingEvent",
"name": "CAMEO week 2017-01-14",
"community_id":"OEBC008",
"is_automated": true,
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Challenge.json
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{
"_id": "CAMEO:CAMEO-3D_2017-01-14",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Challenge",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Challenge",
"name": "CAMEO-3D-week-263",
"benchmarking_event_id": "CAMEO:2017-01-14",
"is_automated": true,
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Community.json
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{
"_id": "OEBC008",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Community",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Community",
"name": "Continuous Automated Model Evaluation",
"acronym": "CAMEO",
"status": "active",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Contacts/CAMEO_contact1.json
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{
"_id": "orcid:0000-0001-7896-6217",
"_schema" : "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Contact",
"_schema" : "https://w3id.org/openebench/scientific-schemas/2.0/Contact",
"community_id" : "OEBC008",
"givenName": "David",
"surname": "Baker",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Contacts/CAMEO_contact2.json
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{
"_id": "orcid:0000-0003-2715-335X",
"_schema" : "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Contact",
"_schema" : "https://w3id.org/openebench/scientific-schemas/2.0/Contact",
"community_id" : "OEBC008",
"givenName": "Torsten",
"surname": "Schwede",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Contacts/CAMEO_contact3.json
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{
"_id": "orcid:0000-0002-6813-3200",
"_schema" : "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Contact",
"_schema" : "https://w3id.org/openebench/scientific-schemas/2.0/Contact",
"community_id" : "OEBC008",
"givenName": "Xavier",
"surname": "Robin",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000003_1_A_IDDT_server11.json
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{
"_id": "CAMEO:2017-01-14_00000003_1_A_IDDT_server11",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000003_1_A_IDDT_server20.json
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{
"_id": "CAMEO:2017-01-14_00000003_1_A_IDDT_server20",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000004_1_A_IDDT_server11.json
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{
"_id": "CAMEO:2017-01-14_00000004_1_A_IDDT_server11",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000004_1_A_IDDT_server20.json
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{
"_id": "CAMEO:2017-01-14_00000004_1_A_IDDT_server20",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000021_1_A_IDDT_server11.json
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{
"_id": "CAMEO:2017-01-14_00000021_1_A_IDDT_server11",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of UfSP from C.elegans Score for IDDT. server20",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000021_1_A_IDDT_server20.json
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{
"_id": "CAMEO:2017-01-14_00000021_1_A_IDDT_server20",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of UfSP from C.elegans Score for IDDT. server20",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/assessment/2017-01-14_00000024_1_A_IDDT_server20.json
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{
"_id": "CAMEO:2017-01-14_00000024_1_A_IDDT_server20",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "assessment",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Insights into Hunter syndrome from the structure of iduronate-2- sulfatase",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/input/2017-01-14_00000003_1_I.json
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{
"_id": "CAMEO:2017-01-14_00000003_1_I",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "input",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/input/2017-01-14_00000004_1_I.json
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{
"_id": "CAMEO:2017-01-14_00000004_1_I",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "input",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "The solution NMR structure of the C-terminal effector domain of BfmR from Acinetobacter baumannii",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/input/2017-01-14_00000010_1_I.json
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{
"_id": "CAMEO:2017-01-14_00000010_1_I",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "input",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of phosphoribulokinase from Methanospirillum hungatei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/input/2017-01-14_00000013_2_I.json
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{
"_id": "CAMEO:2017-01-14_00000013_2_I",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "input",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of death receptor 4 (DR4; TNFFRSF10A) bound to TRAIL (TNFSF10)",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/input/2017-01-14_00000021_1_I.json
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{
"_id": "CAMEO:2017-01-14_00000021_1_I",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "input",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of UfSP from C.elegans",
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{
"_id": "CAMEO:2017-01-14_00000024_1_I",
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"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "input",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Insights into Hunter syndrome from the structure of iduronate-2- sulfatase",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/metrics_reference/2017-01-14_00000003_1_M.json
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{
"_id": "CAMEO:2017-01-14_00000003_1_M",
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"type": "metrics_reference",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/metrics_reference/2017-01-14_00000004_1_M.json
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{
"_id": "CAMEO:2017-01-14_00000004_1_M",
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"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "The solution NMR structure of the C-terminal effector domain of BfmR from Acinetobacter baumannii",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/metrics_reference/2017-01-14_00000010_1_M.json
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{
"_id": "CAMEO:2017-01-14_00000010_1_M",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
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"type": "metrics_reference",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of phosphoribulokinase from Methanospirillum hungatei",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/metrics_reference/2017-01-14_00000013_2_M.json
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{
"_id": "CAMEO:2017-01-14_00000013_2_M",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
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"type": "metrics_reference",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of death receptor 4 (DR4; TNFFRSF10A) bound to TRAIL (TNFSF10)",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/metrics_reference/2017-01-14_00000021_1_M.json
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{
"_id": "CAMEO:2017-01-14_00000021_1_M",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
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"type": "metrics_reference",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Crystal structure of UfSP from C.elegans",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/metrics_reference/2017-01-14_00000024_1_M.json
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{
"_id": "CAMEO:2017-01-14_00000024_1_M",
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"type": "metrics_reference",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Insights into Hunter syndrome from the structure of iduronate-2- sulfatase",
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2 changes: 1 addition & 1 deletion prototype-data/2.0.x/CAMEO/Datasets/participant/2017-01-14_00000003_1_P_server11.json
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{
"_id": "CAMEO:2017-01-14_00000003_1_P_server11",
"_schema": "https://www.elixir-europe.org/excelerate/WP2/json-schemas/2.0/Dataset",
"_schema": "https://w3id.org/openebench/scientific-schemas/2.0/Dataset",
"type": "participant",
"challenge_ids": ["CAMEO:CAMEO-3D_2017-01-14"],
"name": "Solution structure of a PWWP doamin from Trypanosoma brucei",
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