GitHub - icgc-argo-workflows/rna-seq-expression-counting

This repository contains the packages for RNA-Seq expression-counting / normalization analysis that are part of the ICGC ARGO data analysis pipeline.

Statistical method based tool
- stringtie (alignment based)
- salmon (quasi-alignment based)
(Simple) read count based tool
- htseq

Name		Name	Last commit message	Last commit date
Latest commit History 276 Commits
.github/workflows		.github/workflows
htseq		htseq
normalization		normalization
salmon		salmon
scripts		scripts
stringtie		stringtie
test_data		test_data
wfpr_modules		wfpr_modules
.gitignore		.gitignore
.wfpm		.wfpm
LICENSE		LICENSE
LICENSE-short		LICENSE-short
README.md		README.md
nextflow.config		nextflow.config

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