Merge pull request #36 from ahaj/main #37

	name: NHM-Assist continuous integration
	on:
	# run at 6 AM UTC every day
	schedule:
	- cron: '0 6 * * *'
	push:
	branches:
	- main
	- ci
	paths-ignore:
	- '**.md'
	- '.gitignore'
	pull_request:
	branches:
	- main
	paths-ignore:
	- '**.md'
	- '.gitignore'

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:

	# lint:
	# name: Lint
	# runs-on: ubuntu-latest
	# defaults:
	# run:
	# shell: bash
	# steps:
	# - name: Checkout repo
	# uses: actions/checkout@v4

	# - name: Setup python
	# uses: actions/setup-python@v5
	# with:
	# python-version: '3.10'

	# - name: Install ruff
	# run: pip install ruff

	# - name: Lint
	# run: ruff check .

	# - name: Check format
	# run: ruff format . --check

	test:
	name: test notebooks
	# needs: lint
	runs-on: ${{ matrix.os }}

	strategy:
	fail-fast: false
	matrix:
	os: ["macos-latest", "windows-latest", "ubuntu-latest"]
	python-version: ["3.10",] # "3.11"]

	defaults:
	run:
	shell: bash -el {0}

	steps:
	- name: Checkout repo
	uses: actions/checkout@v4

	- name: Setup micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: environment.yaml
	cache-environment: true
	cache-downloads: true

	- name: Pull Williamette River domain data
	run: \|
	./pull_domain.py --name=willamette_river

	- name: Test notebooks
	working-directory: .github/scripts
	run: \|
	python test_notebooks.py

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