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biscuit v1_0_0 as default module
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ianbed committed Sep 17, 2021
1 parent db06776 commit ad16d14
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions bin/config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,6 @@ control_vectors: FALSE # If config["control_vectors"], then the bed files for th
# Only useful if the ref genome included the control vectors with fasta headers >J02459.1 (lamdba / unmethylated control) and >M77789.2 (puc19 / methylated control).
# The ref genome can be modified automatically to include these control vectors as the first two contigs by setting config["build_ref_with_methylation_controls"].


is_nome: FALSE # If data is NOMe-seq data, set to TRUE

run_fastq_screen: FALSE # run fastq_screen with --bisulfite mode (uses Bismark)
Expand All @@ -43,7 +42,8 @@ envmodules:
snakemake: bbc/snakemake/snakemake-5.28.0
trim_galore: bbc/trim_galore/trim_galore-0.6.0
#~ biscuit: bbc/biscuit/biscuit_0_3_16
biscuit: bbc/biscuit/biscuit_dev
#~ biscuit: bbc/biscuit/biscuit_dev
biscuit: bbc/biscuit/biscuit_1_0_0
samblaster: bbc/samblaster/samblaster-0.1.24
htslib: bbc/htslib/htslib-1.10.2
bedtools: bbc/bedtools/bedtools-2.29.2
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