Skip to content

Commit

Permalink
update fig plotting
Browse files Browse the repository at this point in the history
  • Loading branch information
@kuanawanda
kuanawanda committed May 14, 2024
1 parent 6fceac6 commit 121f0ac
Show file tree
Hide file tree
Showing 3 changed files with 1,187 additions and 9 deletions.
1,172 changes: 1,172 additions & 0 deletions 240308_plot_FSC_figs.ipynb
View file

Large diffs are not rendered by default.

9 changes: 5 additions & 4 deletions tomo_lists/tomograms_lst - double_tilt_tomos_11k.csv
View file
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
Tomogram,Label,PID,EXPID,MPID,ccdbprod,Thickness,Series,Tilts/Series,Magnification,Scope/Detector,,PIxel Size (A),Pixel Size bin 4 (nm)
MouseCerebellum_A2S1_SA11k_de64_tomo26,A2S1#26,20471,20471,5403735,ccdbprod29,500nm,,481,11k,Halo/DE64,fpb-bin4,3.5625,1.425
MouseCerebellum_LX112_Aug23_A2S1_SA11k_DE64_tomo4,A2S1#4,20471,20471,5404716,ccdbprod30,750nm,,481,11k,Halo/DE64,fpb-bin4,3.5625,1.425
MouseCerebellum_A1S1_SA11k_de64_tomo20,A1S1#20,20471,20471,5406052,ccdbprod32,250nm,,481,11k,Halo/DE64,fpb-bin4,3.5625,1.425
Tomogram,Label,PID,EXPID,MPID,ccdbprod,Thickness,z_min,z_max,Magnification,Scope/Detector,,PIxel Size (A),Pixel Size bin 4 (nm)
MouseCerebellum_A1S1_SA11k_de64_tomo20,A1S1#20,20471,20471,5406052,ccdbprod32,250nm,14,215,11k,Halo/DE64,fpb-bin4,3.5625,1.425
MouseCerebellum_A2S1_SA11k_de64_tomo26,A2S1#26,20471,20471,5403735,ccdbprod29,500nm,16,372,11k,Halo/DE64,fpb-bin4,3.5625,1.425
MouseCerebellum_LX112_Aug23_A2S1_SA11k_DE64_tomo4,A2S1#4,20471,20471,5404716,ccdbprod30,750nm,24,497,11k,Halo/DE64,fpb-bin4,3.5625,1.425
MouseCerebellum_A4S1_SA11k_de64_tomo12,A4S1#12,20471,20471,5406092,ccdbprod32,1000nm,11,679,11k,Halo/DE64,fpb-bin4,3.5625,1.425
15 changes: 10 additions & 5 deletions tomo_lists/tomograms_lst - double_tilt_tomos_3.3k.csv
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
Tomogram,Label,PID,EXPID,MPID,ccdbprod,Thickness,Series,Tilts/Series,Magnification,Scope/Detector,,PIxel Size (A),Pixel Size bin 4 (nm)
MouseCerebellum_A2S1_SA3.3k_de64_tomo14,A2S1#14,20471,20471,5403735,ccdbprod29,500nm,,481,3.3k,Halo/DE64,fpb-bin4,12.27,4.908
MouseCerebellum_A3S1_SA3.3k_de64_tomo10,A3S1#10,20471,20471,5404040,ccdbprod29,750nm,,481,3.3k,Halo/DE64,fpb-bin4,12.27,4.908
MouseCerebellum_A1S1_SA3.3k_de64_tomo18,A1S1#18,20471,20471,5406026,ccdbprod32,250nm,,481,3.3k,Halo/DE64,fpb-bin4,12.27,4.908
MouseCerebellum_A4S1_SA3.3k_de64_tomo11,A4S1#11,20471,20471,5406078,ccdbprod32,1000nm,,481,3.3k,Halo/DE64,fpb-bin4,12.27,4.908
Tomogram,Label,PID,EXPID,MPID,ccdbprod,Thickness,z_min,z_max,Magnification,PIxel Size (A),Pixel Size bin 4 (nm),pixel thickness,
MouseCerebellum_A1S1_SA3.3k_de64_tomo18,A1S1#18,20471,20471,5406026,ccdbprod32,250nm,14,80,3.3k,12.27,4.908,67,53.6
MouseCerebellum_A1S1_SA3.3k_de64_tomo19,A1S1#19,20471,20471,5406039,ccdbprod32,250nm,12,77,3.3k,12.27,4.908,66,52.8
MouseCerebellum_A2S1_SA3.3k_de64_tomo14,A2S1#14,20471,20471,5403735,ccdbprod29,500nm,12,120,3.3k,12.27,4.908,109,87.2
MouseCerebellum_A2S1_SA3.3k_de64_tomo13,A2S1#13,20471,20471,5403735,ccdbprod29,500nm,10,106,3.3k,12.27,4.908,97,77.6
MouseCerebellum_A2S1_SA3.3k_de64_tomo21,A2S1#21,20471,20471,5403735,ccdbprod29,500nm,11,106,3.3k,12.27,4.908,96,76.8
MouseCerebellum_A3S1_SA3.3k_de64_tomo10,A3S1#10,20471,20471,5404040,ccdbprod29,750nm,14,167,3.3k,12.27,4.908,154,123.2
MouseCerebellum_A3S1_SA3.3k_de64_tomo11,A3S1#11,20471,20471,5404040,ccdbprod29,750nm,13,169,3.3k,12.27,4.908,157,125.6
MouseCerebellum_A4S1_SA3.3k_de64_tomo10,A4S1#10,20471,20471,5406065,ccdbprod32,1000nm,14,207,3.3k,12.27,4.908,194,155.2
MouseCerebellum_A4S1_SA3.3k_de64_tomo11,A4S1#11,20471,20471,5406078,ccdbprod32,1000nm,11,208,3.3k,12.27,4.908,198,158.4

0 comments on commit 121f0ac

Please sign in to comment.