Quality Control(qualc)

一款为fmriprep生成的质量控制系统，可以帮助你快速的检查质量，并且可以帮助你更好的控制质量。

安装

python setup.py install

命令行使用

qualc -h

usage: qualc [-h] [-v] -fmriprep FMRIPREP_PATH -o OUTPUT_PATH [--func] [--fs]
             [--fd_threshold FD_THRESHOLD] [--fs_threshold FS_THRESHOLD]
             [--fs_level FS_LEVEL] [--tsne] [--plot_type PLOT_TYPE]

QC command version 0.0.1

optional arguments:
  -h, --help            show this help message and exit
  -v, --verbose         verbose
  -fmriprep FMRIPREP_PATH, --fmriprep_path FMRIPREP_PATH
                        path to fmriprep
  -o OUTPUT_PATH, --output_path OUTPUT_PATH
                        path to output
  --func                func qc
  --fs                  fs qc
  --fd_threshold FD_THRESHOLD
                        fd threshold, default 0.5
  --fs_threshold FS_THRESHOLD
                        fs threshold, default 10
  --fs_level FS_LEVEL   fs level [group,prior], default group
  --tsne                tsne plot outline
  --plot_type PLOT_TYPE
                        plot type [distribution,bar],default distribution

python使用

from qualc import FuncQC,MRIQC,FreeSurferQC
from qualc.func import fMRIprepFuncFeature
from qualc.mri import fMRIprepMRIFeature
from qualc.freesurfer import fMrepFreesurferFeature
from qualc.bids import BIDSQC


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