added example config and example bamlist

hendrixlab · Jun 23, 2019 · 726e0b9 · 726e0b9
1 parent cba6356
commit 726e0b9
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diff --git a/example_bamlist.txt b/example_bamlist.txt
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+hsa_cellLines1	/<path>/hsa_cellLines1.bam
+hsa_cellLines2	/<path>/hsa_cellLines2.bam
+hsa_cellLines3	/<path>/hsa_cellLines3.bam
+hsa_cellLines4	/<path>/hsa_cellLines4.bam
+hsa_cellLines5	/<path>/hsa_cellLines5.bam
diff --git a/example_config.txt b/example_config.txt
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+scriptDir	=	/< path >/miRWoods/Scripts
+hairpinRF	=	/< path >/miRWoods/Models/hairpinRF.model
+productRF	=	/< path >/miRWoods/Models/productRF.model
+SizesFile	=	/< path >/hg19.chrom.sizes
+genomeDir	=	/< path >/hg19
+geneModels	=	/< path >/hg19_ensembl.gff3
+mirbaseGff	=	hsa.gff3
+bamListFile	=	bamlist.txt
+minReadLength	=	14
+maxReadLength	=	28
+HPDVCutoff	=	0.28
+ARPMCutoff	=	0.11