example_config.txt

scriptDir	=	/< path >/miRWoods/Scripts
hairpinRF	=	/< path >/miRWoods/Models/hairpinRF.model
productRF	=	/< path >/miRWoods/Models/productRF.model
SizesFile	=	/< path >/hg19.chrom.sizes
genomeDir	=	/< path >/hg19
geneModels	=	/< path >/hg19_ensembl.gff3
mirbaseGff	=	hsa.gff3
bamListFile	=	bamlist.txt
minReadLength	=	14
maxReadLength	=	28
HPDVCutoff	=	0.28
ARPMCutoff	=	0.11